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THSD1 (thrombospondin type 1 domain containing 1)

Identity

Alias_namesthrombospondin
Alias_symbol (synonym)TMTSP
Other aliasUNQ3010
HGNC (Hugo) THSD1
LocusID (NCBI) 55901
Atlas_Id 50286
Location 13q14.3  [Link to chromosome band 13q14]
Location_base_pair Starts at 52377168 and ends at 52406494 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
THSD1 (13q14.3) / LARS (5q32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)THSD1   17754
Cards
Entrez_Gene (NCBI)THSD1  55901  thrombospondin type 1 domain containing 1
AliasesTMTSP; UNQ3010
GeneCards (Weizmann)THSD1
Ensembl hg19 (Hinxton)ENSG00000136114 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000136114 [Gene_View]  chr13:52377168-52406494 [Contig_View]  THSD1 [Vega]
ICGC DataPortalENSG00000136114
TCGA cBioPortalTHSD1
AceView (NCBI)THSD1
Genatlas (Paris)THSD1
WikiGenes55901
SOURCE (Princeton)THSD1
Genetics Home Reference (NIH)THSD1
Genomic and cartography
GoldenPath hg38 (UCSC)THSD1  -     chr13:52377168-52406494 -  13q14.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)THSD1  -     13q14.3   [Description]    (hg19-Feb_2009)
EnsemblTHSD1 - 13q14.3 [CytoView hg19]  THSD1 - 13q14.3 [CytoView hg38]
Mapping of homologs : NCBITHSD1 [Mapview hg19]  THSD1 [Mapview hg38]
OMIM616821   
Gene and transcription
Genbank (Entrez)AB044385 AK096289 AK298974 AK315087 AY358149
RefSeq transcript (Entrez)NM_018676 NM_199263
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)THSD1
Cluster EST : UnigeneHs.325667 [ NCBI ]
CGAP (NCI)Hs.325667
Alternative Splicing GalleryENSG00000136114
Gene ExpressionTHSD1 [ NCBI-GEO ]   THSD1 [ EBI - ARRAY_EXPRESS ]   THSD1 [ SEEK ]   THSD1 [ MEM ]
Gene Expression Viewer (FireBrowse)THSD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55901
GTEX Portal (Tissue expression)THSD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NS62   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NS62  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NS62
Splice isoforms : SwissVarQ9NS62
PhosPhoSitePlusQ9NS62
Domaine pattern : Prosite (Expaxy)TSP1 (PS50092)   
Domains : Interpro (EBI)TSP1_rpt   
Domain families : Pfam (Sanger)TSP_1 (PF00090)   
Domain families : Pfam (NCBI)pfam00090   
Domain families : Smart (EMBL)TSP1 (SM00209)  
Conserved Domain (NCBI)THSD1
DMDM Disease mutations55901
Blocks (Seattle)THSD1
SuperfamilyQ9NS62
Human Protein AtlasENSG00000136114
Peptide AtlasQ9NS62
HPRD18180
IPIIPI00032929   IPI00398083   IPI00432781   IPI01012565   
Protein Interaction databases
DIP (DOE-UCLA)Q9NS62
IntAct (EBI)Q9NS62
FunCoupENSG00000136114
BioGRIDTHSD1
STRING (EMBL)THSD1
ZODIACTHSD1
Ontologies - Pathways
QuickGOQ9NS62
Ontology : AmiGOextracellular region  cytosol  integral component of membrane  
Ontology : EGO-EBIextracellular region  cytosol  integral component of membrane  
NDEx NetworkTHSD1
Atlas of Cancer Signalling NetworkTHSD1
Wikipedia pathwaysTHSD1
Orthology - Evolution
OrthoDB55901
GeneTree (enSembl)ENSG00000136114
Phylogenetic Trees/Animal Genes : TreeFamTHSD1
HOVERGENQ9NS62
HOGENOMQ9NS62
Homologs : HomoloGeneTHSD1
Homology/Alignments : Family Browser (UCSC)THSD1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTHSD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)THSD1
dbVarTHSD1
ClinVarTHSD1
1000_GenomesTHSD1 
Exome Variant ServerTHSD1
ExAC (Exome Aggregation Consortium)THSD1 (select the gene name)
Genetic variants : HAPMAP55901
Genomic Variants (DGV)THSD1 [DGVbeta]
DECIPHERTHSD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTHSD1 
Mutations
ICGC Data PortalTHSD1 
TCGA Data PortalTHSD1 
Broad Tumor PortalTHSD1
OASIS PortalTHSD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTHSD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTHSD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch THSD1
DgiDB (Drug Gene Interaction Database)THSD1
DoCM (Curated mutations)THSD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)THSD1 (select a term)
intoGenTHSD1
Cancer3DTHSD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616821   
Orphanet
MedgenTHSD1
Genetic Testing Registry THSD1
NextProtQ9NS62 [Medical]
TSGene55901
GENETestsTHSD1
Target ValidationTHSD1
Huge Navigator THSD1 [HugePedia]
snp3D : Map Gene to Disease55901
BioCentury BCIQTHSD1
ClinGenTHSD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55901
Chemical/Pharm GKB GenePA134937912
Clinical trialTHSD1
Miscellaneous
canSAR (ICR)THSD1 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTHSD1
EVEXTHSD1
GoPubMedTHSD1
iHOPTHSD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:59:20 CEST 2017

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