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THSD7A (thrombospondin type 1 domain containing 7A)

Identity

Alias (NCBI)-
HGNC (Hugo) THSD7A
HGNC Alias symbKIAA0960
LocusID (NCBI) 221981
Atlas_Id 56989
Location 7p21.3  [Link to chromosome band 7p21]
Location_base_pair Starts at 11370365 and ends at 11832198 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ATXN3 (14q32.12) / THSD7A (7p21.3)CUX1 (7q22.1) / THSD7A (7p21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)THSD7A   22207
Cards
Entrez_Gene (NCBI)THSD7A    thrombospondin type 1 domain containing 7A
Aliases
GeneCards (Weizmann)THSD7A
Ensembl hg19 (Hinxton)ENSG00000005108 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000005108 [Gene_View]  ENSG00000005108 [Sequence]  chr7:11370365-11832198 [Contig_View]  THSD7A [Vega]
ICGC DataPortalENSG00000005108
TCGA cBioPortalTHSD7A
AceView (NCBI)THSD7A
Genatlas (Paris)THSD7A
SOURCE (Princeton)THSD7A
Genetics Home Reference (NIH)THSD7A
Genomic and cartography
GoldenPath hg38 (UCSC)THSD7A  -     chr7:11370365-11832198 -  7p21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)THSD7A  -     7p21.3   [Description]    (hg19-Feb_2009)
GoldenPathTHSD7A - 7p21.3 [CytoView hg19]  THSD7A - 7p21.3 [CytoView hg38]
ImmunoBaseENSG00000005108
Genome Data Viewer NCBITHSD7A [Mapview hg19]  
OMIM612249   
Gene and transcription
Genbank (Entrez)AA297188 AA995609 AB023177 AK001884 AK092252
RefSeq transcript (Entrez)NM_015204
Consensus coding sequences : CCDS (NCBI)THSD7A
Gene ExpressionTHSD7A [ NCBI-GEO ]   THSD7A [ EBI - ARRAY_EXPRESS ]   THSD7A [ SEEK ]   THSD7A [ MEM ]
Gene Expression Viewer (FireBrowse)THSD7A [ Firebrowse - Broad ]
GenevisibleExpression of THSD7A in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)221981
GTEX Portal (Tissue expression)THSD7A
Human Protein AtlasENSG00000005108-THSD7A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UPZ6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UPZ6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UPZ6
PhosPhoSitePlusQ9UPZ6
Domaine pattern : Prosite (Expaxy)TSP1 (PS50092)   
Domains : Interpro (EBI)TSP1_rpt    TSP1_rpt_sf    TSP1_spondin_dom   
Domain families : Pfam (Sanger)TSP1_spondin (PF19028)    TSP_1 (PF00090)   
Domain families : Pfam (NCBI)pfam19028    pfam00090   
Domain families : Smart (EMBL)TSP1 (SM00209)  
Conserved Domain (NCBI)THSD7A
SuperfamilyQ9UPZ6
AlphaFold pdb e-kbQ9UPZ6   
Human Protein Atlas [tissue]ENSG00000005108-THSD7A [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q9UPZ6
IntAct (EBI)Q9UPZ6
BioGRIDTHSD7A
STRING (EMBL)THSD7A
ZODIACTHSD7A
Ontologies - Pathways
QuickGOQ9UPZ6
Ontology : AmiGOangiogenesis  protein binding  extracellular region  plasma membrane  plasma membrane  integral component of membrane  cell differentiation  actin cytoskeleton reorganization  cell projection  
Ontology : EGO-EBIangiogenesis  protein binding  extracellular region  plasma membrane  plasma membrane  integral component of membrane  cell differentiation  actin cytoskeleton reorganization  cell projection  
NDEx NetworkTHSD7A
Atlas of Cancer Signalling NetworkTHSD7A
Wikipedia pathwaysTHSD7A
Orthology - Evolution
OrthoDB221981
GeneTree (enSembl)ENSG00000005108
Phylogenetic Trees/Animal Genes : TreeFamTHSD7A
Homologs : HomoloGeneTHSD7A
Homology/Alignments : Family Browser (UCSC)THSD7A
Gene fusions - Rearrangements
Fusion : QuiverTHSD7A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTHSD7A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)THSD7A
dbVarTHSD7A
ClinVarTHSD7A
MonarchTHSD7A
1000_GenomesTHSD7A 
Exome Variant ServerTHSD7A
GNOMAD BrowserENSG00000005108
Varsome BrowserTHSD7A
ACMGTHSD7A variants
VarityQ9UPZ6
Genomic Variants (DGV)THSD7A [DGVbeta]
DECIPHERTHSD7A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTHSD7A 
Mutations
ICGC Data PortalTHSD7A 
TCGA Data PortalTHSD7A 
Broad Tumor PortalTHSD7A
OASIS PortalTHSD7A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTHSD7A  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTHSD7A
Mutations and Diseases : HGMDTHSD7A
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTHSD7A
DgiDB (Drug Gene Interaction Database)THSD7A
DoCM (Curated mutations)THSD7A
CIViC (Clinical Interpretations of Variants in Cancer)THSD7A
Cancer3DTHSD7A
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612249   
Orphanet
DisGeNETTHSD7A
MedgenTHSD7A
Genetic Testing Registry THSD7A
NextProtQ9UPZ6 [Medical]
GENETestsTHSD7A
Target ValidationTHSD7A
Huge Navigator THSD7A [HugePedia]
ClinGenTHSD7A
Clinical trials, drugs, therapy
MyCancerGenomeTHSD7A
Protein Interactions : CTDTHSD7A
Pharm GKB GenePA162405715
PharosQ9UPZ6
Clinical trialTHSD7A
Miscellaneous
canSAR (ICR)THSD7A
HarmonizomeTHSD7A
DataMed IndexTHSD7A
Probes
Litterature
PubMed36 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTHSD7A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:35:03 CEST 2021

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