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THSD7A (thrombospondin type 1 domain containing 7A)

Identity

Other alias-
HGNC (Hugo) THSD7A
LocusID (NCBI) 221981
Atlas_Id 56989
Location 7p21.3  [Link to chromosome band 7p21]
Location_base_pair Starts at 11370435 and ends at 11832198 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ATXN3 (14q32.12) / THSD7A (7p21.3)CUX1 (7q22.1) / THSD7A (7p21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)THSD7A   22207
Cards
Entrez_Gene (NCBI)THSD7A  221981  thrombospondin type 1 domain containing 7A
Aliases
GeneCards (Weizmann)THSD7A
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr7:11370435-11832198 [Contig_View]  THSD7A [Vega]
TCGA cBioPortalTHSD7A
AceView (NCBI)THSD7A
Genatlas (Paris)THSD7A
WikiGenes221981
SOURCE (Princeton)THSD7A
Genetics Home Reference (NIH)THSD7A
Genomic and cartography
GoldenPath hg38 (UCSC)THSD7A  -     chr7:11370435-11832198 -  7p21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)THSD7A  -     7p21.3   [Description]    (hg19-Feb_2009)
EnsemblTHSD7A - 7p21.3 [CytoView hg19]  THSD7A - 7p21.3 [CytoView hg38]
Mapping of homologs : NCBITHSD7A [Mapview hg19]  THSD7A [Mapview hg38]
OMIM612249   
Gene and transcription
Genbank (Entrez)AA297188 AA995609 AB023177 AK001884 AK092252
RefSeq transcript (Entrez)NM_015204
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)THSD7A
Cluster EST : UnigeneHs.120855 [ NCBI ]
CGAP (NCI)Hs.120855
Gene ExpressionTHSD7A [ NCBI-GEO ]   THSD7A [ EBI - ARRAY_EXPRESS ]   THSD7A [ SEEK ]   THSD7A [ MEM ]
Gene Expression Viewer (FireBrowse)THSD7A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)221981
GTEX Portal (Tissue expression)THSD7A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UPZ6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UPZ6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UPZ6
Splice isoforms : SwissVarQ9UPZ6
PhosPhoSitePlusQ9UPZ6
Domaine pattern : Prosite (Expaxy)TSP1 (PS50092)   
Domains : Interpro (EBI)TSP1_rpt   
Domain families : Pfam (Sanger)TSP_1 (PF00090)   
Domain families : Pfam (NCBI)pfam00090   
Domain families : Smart (EMBL)TSP1 (SM00209)  
Conserved Domain (NCBI)THSD7A
DMDM Disease mutations221981
Blocks (Seattle)THSD7A
SuperfamilyQ9UPZ6
Peptide AtlasQ9UPZ6
IPIIPI00741524   IPI00942909   IPI01011908   
Protein Interaction databases
DIP (DOE-UCLA)Q9UPZ6
IntAct (EBI)Q9UPZ6
BioGRIDTHSD7A
STRING (EMBL)THSD7A
ZODIACTHSD7A
Ontologies - Pathways
QuickGOQ9UPZ6
Ontology : AmiGOangiogenesis  plasma membrane  integral component of membrane  cell differentiation  extracellular exosome  
Ontology : EGO-EBIangiogenesis  plasma membrane  integral component of membrane  cell differentiation  extracellular exosome  
NDEx NetworkTHSD7A
Atlas of Cancer Signalling NetworkTHSD7A
Wikipedia pathwaysTHSD7A
Orthology - Evolution
OrthoDB221981
Phylogenetic Trees/Animal Genes : TreeFamTHSD7A
HOVERGENQ9UPZ6
HOGENOMQ9UPZ6
Homologs : HomoloGeneTHSD7A
Homology/Alignments : Family Browser (UCSC)THSD7A
Gene fusions - Rearrangements
Fusion: Tumor Portal THSD7A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTHSD7A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)THSD7A
dbVarTHSD7A
ClinVarTHSD7A
1000_GenomesTHSD7A 
Exome Variant ServerTHSD7A
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP221981
Genomic Variants (DGV)THSD7A [DGVbeta]
DECIPHERTHSD7A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTHSD7A 
Mutations
ICGC Data PortalTHSD7A 
TCGA Data PortalTHSD7A 
Broad Tumor PortalTHSD7A
OASIS PortalTHSD7A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTHSD7A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTHSD7A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch THSD7A
DgiDB (Drug Gene Interaction Database)THSD7A
DoCM (Curated mutations)THSD7A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)THSD7A (select a term)
intoGenTHSD7A
Cancer3DTHSD7A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612249   
Orphanet
MedgenTHSD7A
Genetic Testing Registry THSD7A
NextProtQ9UPZ6 [Medical]
TSGene221981
GENETestsTHSD7A
Target ValidationTHSD7A
Huge Navigator THSD7A [HugePedia]
snp3D : Map Gene to Disease221981
BioCentury BCIQTHSD7A
ClinGenTHSD7A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD221981
Chemical/Pharm GKB GenePA162405715
Clinical trialTHSD7A
Miscellaneous
canSAR (ICR)THSD7A (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTHSD7A
EVEXTHSD7A
GoPubMedTHSD7A
iHOPTHSD7A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 13:14:28 CET 2017

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