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THUMPD1 (THUMP domain containing 1)

Identity

Alias_symbol (synonym)FLJ20274
Tan1
Other alias
HGNC (Hugo) THUMPD1
LocusID (NCBI) 55623
Atlas_Id 74690
Location 16p12.3  [Link to chromosome band 16p12]
Location_base_pair Starts at 20733666 and ends at 20741964 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
THUMPD1 (16p12.3) / HERC4 (10q21.3)THUMPD1 (16p12.3) / SIK2 (11q23.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)THUMPD1   23807
Cards
Entrez_Gene (NCBI)THUMPD1  55623  THUMP domain containing 1
AliasesTan1
GeneCards (Weizmann)THUMPD1
Ensembl hg19 (Hinxton)ENSG00000066654 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000066654 [Gene_View]  chr16:20733666-20741964 [Contig_View]  THUMPD1 [Vega]
ICGC DataPortalENSG00000066654
TCGA cBioPortalTHUMPD1
AceView (NCBI)THUMPD1
Genatlas (Paris)THUMPD1
WikiGenes55623
SOURCE (Princeton)THUMPD1
Genetics Home Reference (NIH)THUMPD1
Genomic and cartography
GoldenPath hg38 (UCSC)THUMPD1  -     chr16:20733666-20741964 -  16p12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)THUMPD1  -     16p12.3   [Description]    (hg19-Feb_2009)
EnsemblTHUMPD1 - 16p12.3 [CytoView hg19]  THUMPD1 - 16p12.3 [CytoView hg38]
Mapping of homologs : NCBITHUMPD1 [Mapview hg19]  THUMPD1 [Mapview hg38]
OMIM616662   
Gene and transcription
Genbank (Entrez)AK000281 AK294328 BC000448 BX640898 DA421094
RefSeq transcript (Entrez)NM_001304550 NM_017736
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)THUMPD1
Cluster EST : UnigeneHs.700004 [ NCBI ]
CGAP (NCI)Hs.700004
Alternative Splicing GalleryENSG00000066654
Gene ExpressionTHUMPD1 [ NCBI-GEO ]   THUMPD1 [ EBI - ARRAY_EXPRESS ]   THUMPD1 [ SEEK ]   THUMPD1 [ MEM ]
Gene Expression Viewer (FireBrowse)THUMPD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55623
GTEX Portal (Tissue expression)THUMPD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NXG2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NXG2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NXG2
Splice isoforms : SwissVarQ9NXG2
PhosPhoSitePlusQ9NXG2
Domaine pattern : Prosite (Expaxy)THUMP (PS51165)   
Domains : Interpro (EBI)THUMP_dom   
Domain families : Pfam (Sanger)THUMP (PF02926)   
Domain families : Pfam (NCBI)pfam02926   
Domain families : Smart (EMBL)THUMP (SM00981)  
Conserved Domain (NCBI)THUMPD1
DMDM Disease mutations55623
Blocks (Seattle)THUMPD1
PDB (SRS)2DIR   
PDB (PDBSum)2DIR   
PDB (IMB)2DIR   
PDB (RSDB)2DIR   
Structural Biology KnowledgeBase2DIR   
SCOP (Structural Classification of Proteins)2DIR   
CATH (Classification of proteins structures)2DIR   
SuperfamilyQ9NXG2
Human Protein AtlasENSG00000066654
Peptide AtlasQ9NXG2
HPRD08619
IPIIPI00550243   IPI00465054   
Protein Interaction databases
DIP (DOE-UCLA)Q9NXG2
IntAct (EBI)Q9NXG2
FunCoupENSG00000066654
BioGRIDTHUMPD1
STRING (EMBL)THUMPD1
ZODIACTHUMPD1
Ontologies - Pathways
QuickGOQ9NXG2
Ontology : AmiGOrRNA modification  RNA binding  RNA binding  protein binding  nucleoplasm  tRNA modification  
Ontology : EGO-EBIrRNA modification  RNA binding  RNA binding  protein binding  nucleoplasm  tRNA modification  
NDEx NetworkTHUMPD1
Atlas of Cancer Signalling NetworkTHUMPD1
Wikipedia pathwaysTHUMPD1
Orthology - Evolution
OrthoDB55623
GeneTree (enSembl)ENSG00000066654
Phylogenetic Trees/Animal Genes : TreeFamTHUMPD1
HOVERGENQ9NXG2
HOGENOMQ9NXG2
Homologs : HomoloGeneTHUMPD1
Homology/Alignments : Family Browser (UCSC)THUMPD1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTHUMPD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)THUMPD1
dbVarTHUMPD1
ClinVarTHUMPD1
1000_GenomesTHUMPD1 
Exome Variant ServerTHUMPD1
ExAC (Exome Aggregation Consortium)THUMPD1 (select the gene name)
Genetic variants : HAPMAP55623
Genomic Variants (DGV)THUMPD1 [DGVbeta]
DECIPHERTHUMPD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTHUMPD1 
Mutations
ICGC Data PortalTHUMPD1 
TCGA Data PortalTHUMPD1 
Broad Tumor PortalTHUMPD1
OASIS PortalTHUMPD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTHUMPD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTHUMPD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch THUMPD1
DgiDB (Drug Gene Interaction Database)THUMPD1
DoCM (Curated mutations)THUMPD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)THUMPD1 (select a term)
intoGenTHUMPD1
Cancer3DTHUMPD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616662   
Orphanet
MedgenTHUMPD1
Genetic Testing Registry THUMPD1
NextProtQ9NXG2 [Medical]
TSGene55623
GENETestsTHUMPD1
Huge Navigator THUMPD1 [HugePedia]
snp3D : Map Gene to Disease55623
BioCentury BCIQTHUMPD1
ClinGenTHUMPD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55623
Chemical/Pharm GKB GenePA134983093
Clinical trialTHUMPD1
Miscellaneous
canSAR (ICR)THUMPD1 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTHUMPD1
EVEXTHUMPD1
GoPubMedTHUMPD1
iHOPTHUMPD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:58:01 CEST 2017

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