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THUMPD1 (THUMP domain containing 1)

Identity

Alias (NCBI)Tan1
HGNC (Hugo) THUMPD1
HGNC Alias symbFLJ20274
Tan1
LocusID (NCBI) 55623
Atlas_Id 57132
Location 16p12.3  [Link to chromosome band 16p12]
Location_base_pair Starts at 20733666 and ends at 20741818 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
THUMPD1 (16p12.3) / HERC4 (10q21.3)THUMPD1 (16p12.3) / SIK2 (11q23.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)THUMPD1   23807
Cards
Entrez_Gene (NCBI)THUMPD1    THUMP domain containing 1
AliasesTan1
GeneCards (Weizmann)THUMPD1
Ensembl hg19 (Hinxton)ENSG00000066654 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000066654 [Gene_View]  ENSG00000066654 [Sequence]  chr16:20733666-20741818 [Contig_View]  THUMPD1 [Vega]
ICGC DataPortalENSG00000066654
TCGA cBioPortalTHUMPD1
AceView (NCBI)THUMPD1
Genatlas (Paris)THUMPD1
SOURCE (Princeton)THUMPD1
Genetics Home Reference (NIH)THUMPD1
Genomic and cartography
GoldenPath hg38 (UCSC)THUMPD1  -     chr16:20733666-20741818 -  16p12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)THUMPD1  -     16p12.3   [Description]    (hg19-Feb_2009)
GoldenPathTHUMPD1 - 16p12.3 [CytoView hg19]  THUMPD1 - 16p12.3 [CytoView hg38]
ImmunoBaseENSG00000066654
Genome Data Viewer NCBITHUMPD1 [Mapview hg19]  
OMIM616662   
Gene and transcription
Genbank (Entrez)AK000281 AK294328 BC000448 BX640898 DA421094
RefSeq transcript (Entrez)NM_001304550 NM_017736
Consensus coding sequences : CCDS (NCBI)THUMPD1
Gene ExpressionTHUMPD1 [ NCBI-GEO ]   THUMPD1 [ EBI - ARRAY_EXPRESS ]   THUMPD1 [ SEEK ]   THUMPD1 [ MEM ]
Gene Expression Viewer (FireBrowse)THUMPD1 [ Firebrowse - Broad ]
GenevisibleExpression of THUMPD1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55623
GTEX Portal (Tissue expression)THUMPD1
Human Protein AtlasENSG00000066654-THUMPD1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NXG2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NXG2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NXG2
PhosPhoSitePlusQ9NXG2
Domaine pattern : Prosite (Expaxy)THUMP (PS51165)   
Domains : Interpro (EBI)THUMP_dom    THUMPD1-like   
Domain families : Pfam (Sanger)THUMP (PF02926)   
Domain families : Pfam (NCBI)pfam02926   
Domain families : Smart (EMBL)THUMP (SM00981)  
Conserved Domain (NCBI)THUMPD1
PDB (RSDB)2DIR   
PDB Europe2DIR   
PDB (PDBSum)2DIR   
PDB (IMB)2DIR   
Structural Biology KnowledgeBase2DIR   
SCOP (Structural Classification of Proteins)2DIR   
CATH (Classification of proteins structures)2DIR   
SuperfamilyQ9NXG2
AlphaFold pdb e-kbQ9NXG2   
Human Protein Atlas [tissue]ENSG00000066654-THUMPD1 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q9NXG2
IntAct (EBI)Q9NXG2
BioGRIDTHUMPD1
STRING (EMBL)THUMPD1
ZODIACTHUMPD1
Ontologies - Pathways
QuickGOQ9NXG2
Ontology : AmiGOrRNA modification  RNA binding  RNA binding  protein binding  nucleoplasm  tRNA modification  
Ontology : EGO-EBIrRNA modification  RNA binding  RNA binding  protein binding  nucleoplasm  tRNA modification  
NDEx NetworkTHUMPD1
Atlas of Cancer Signalling NetworkTHUMPD1
Wikipedia pathwaysTHUMPD1
Orthology - Evolution
OrthoDB55623
GeneTree (enSembl)ENSG00000066654
Phylogenetic Trees/Animal Genes : TreeFamTHUMPD1
Homologs : HomoloGeneTHUMPD1
Homology/Alignments : Family Browser (UCSC)THUMPD1
Gene fusions - Rearrangements
Fusion : QuiverTHUMPD1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTHUMPD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)THUMPD1
dbVarTHUMPD1
ClinVarTHUMPD1
MonarchTHUMPD1
1000_GenomesTHUMPD1 
Exome Variant ServerTHUMPD1
GNOMAD BrowserENSG00000066654
Varsome BrowserTHUMPD1
ACMGTHUMPD1 variants
VarityQ9NXG2
Genomic Variants (DGV)THUMPD1 [DGVbeta]
DECIPHERTHUMPD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTHUMPD1 
Mutations
ICGC Data PortalTHUMPD1 
TCGA Data PortalTHUMPD1 
Broad Tumor PortalTHUMPD1
OASIS PortalTHUMPD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTHUMPD1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTHUMPD1
Mutations and Diseases : HGMDTHUMPD1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTHUMPD1
DgiDB (Drug Gene Interaction Database)THUMPD1
DoCM (Curated mutations)THUMPD1
CIViC (Clinical Interpretations of Variants in Cancer)THUMPD1
Cancer3DTHUMPD1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616662   
Orphanet
DisGeNETTHUMPD1
MedgenTHUMPD1
Genetic Testing Registry THUMPD1
NextProtQ9NXG2 [Medical]
GENETestsTHUMPD1
Target ValidationTHUMPD1
Huge Navigator THUMPD1 [HugePedia]
ClinGenTHUMPD1
Clinical trials, drugs, therapy
MyCancerGenomeTHUMPD1
Protein Interactions : CTDTHUMPD1
Pharm GKB GenePA134983093
PharosQ9NXG2
Clinical trialTHUMPD1
Miscellaneous
canSAR (ICR)THUMPD1
HarmonizomeTHUMPD1
DataMed IndexTHUMPD1
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTHUMPD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:35:04 CEST 2021

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