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THUMPD2 (THUMP domain containing 2)

Identity

Alias (NCBI)C2orf8
HGNC (Hugo) THUMPD2
HGNC Alias symbMGC2454
HGNC Previous nameC2orf8
HGNC Previous namechromosome 2 open reading frame 8
LocusID (NCBI) 80745
Atlas_Id 74691
Location 2p22.1  [Link to chromosome band 2p22]
Location_base_pair Starts at 39736061 and ends at 39779258 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
THUMPD2 (2p22.1) / THUMPD2 (2p22.1)THUMPD2 (2p22.1) / VSNL1 (2p24.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)THUMPD2   14890
Cards
Entrez_Gene (NCBI)THUMPD2    THUMP domain containing 2
AliasesC2orf8
GeneCards (Weizmann)THUMPD2
Ensembl hg19 (Hinxton)ENSG00000138050 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000138050 [Gene_View]  ENSG00000138050 [Sequence]  chr2:39736061-39779258 [Contig_View]  THUMPD2 [Vega]
ICGC DataPortalENSG00000138050
TCGA cBioPortalTHUMPD2
AceView (NCBI)THUMPD2
Genatlas (Paris)THUMPD2
SOURCE (Princeton)THUMPD2
Genetics Home Reference (NIH)THUMPD2
Genomic and cartography
GoldenPath hg38 (UCSC)THUMPD2  -     chr2:39736061-39779258 -  2p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)THUMPD2  -     2p22.1   [Description]    (hg19-Feb_2009)
GoldenPathTHUMPD2 - 2p22.1 [CytoView hg19]  THUMPD2 - 2p22.1 [CytoView hg38]
ImmunoBaseENSG00000138050
Genome Data Viewer NCBITHUMPD2 [Mapview hg19]  
OMIM611751   
Gene and transcription
Genbank (Entrez)AF380577 AF380578 AF380579 AK057801 AK093580
RefSeq transcript (Entrez)NM_001321468 NM_001321469 NM_001321470 NM_001321474 NM_001321475 NM_001321477 NM_001321478 NM_001321479 NM_001321480 NM_001321481 NM_025264
Consensus coding sequences : CCDS (NCBI)THUMPD2
Gene ExpressionTHUMPD2 [ NCBI-GEO ]   THUMPD2 [ EBI - ARRAY_EXPRESS ]   THUMPD2 [ SEEK ]   THUMPD2 [ MEM ]
Gene Expression Viewer (FireBrowse)THUMPD2 [ Firebrowse - Broad ]
GenevisibleExpression of THUMPD2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80745
GTEX Portal (Tissue expression)THUMPD2
Human Protein AtlasENSG00000138050-THUMPD2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BTF0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BTF0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BTF0
PhosPhoSitePlusQ9BTF0
Domaine pattern : Prosite (Expaxy)THUMP (PS51165)   
Domains : Interpro (EBI)RNA_methylase_dom    SAM-dependent_MTases    THUMP_dom   
Domain families : Pfam (Sanger)THUMP (PF02926)    UPF0020 (PF01170)   
Domain families : Pfam (NCBI)pfam02926    pfam01170   
Domain families : Smart (EMBL)THUMP (SM00981)  
Conserved Domain (NCBI)THUMPD2
SuperfamilyQ9BTF0
AlphaFold pdb e-kbQ9BTF0   
Human Protein Atlas [tissue]ENSG00000138050-THUMPD2 [tissue]
HPRD15506
Protein Interaction databases
DIP (DOE-UCLA)Q9BTF0
IntAct (EBI)Q9BTF0
BioGRIDTHUMPD2
STRING (EMBL)THUMPD2
ZODIACTHUMPD2
Ontologies - Pathways
QuickGOQ9BTF0
Ontology : AmiGORNA binding  protein binding  tRNA (guanine) methyltransferase activity  tRNA methylation  
Ontology : EGO-EBIRNA binding  protein binding  tRNA (guanine) methyltransferase activity  tRNA methylation  
NDEx NetworkTHUMPD2
Atlas of Cancer Signalling NetworkTHUMPD2
Wikipedia pathwaysTHUMPD2
Orthology - Evolution
OrthoDB80745
GeneTree (enSembl)ENSG00000138050
Phylogenetic Trees/Animal Genes : TreeFamTHUMPD2
Homologs : HomoloGeneTHUMPD2
Homology/Alignments : Family Browser (UCSC)THUMPD2
Gene fusions - Rearrangements
Fusion : QuiverTHUMPD2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTHUMPD2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)THUMPD2
dbVarTHUMPD2
ClinVarTHUMPD2
MonarchTHUMPD2
1000_GenomesTHUMPD2 
Exome Variant ServerTHUMPD2
GNOMAD BrowserENSG00000138050
Varsome BrowserTHUMPD2
ACMGTHUMPD2 variants
VarityQ9BTF0
Genomic Variants (DGV)THUMPD2 [DGVbeta]
DECIPHERTHUMPD2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTHUMPD2 
Mutations
ICGC Data PortalTHUMPD2 
TCGA Data PortalTHUMPD2 
Broad Tumor PortalTHUMPD2
OASIS PortalTHUMPD2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTHUMPD2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTHUMPD2
Mutations and Diseases : HGMDTHUMPD2
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTHUMPD2
DgiDB (Drug Gene Interaction Database)THUMPD2
DoCM (Curated mutations)THUMPD2
CIViC (Clinical Interpretations of Variants in Cancer)THUMPD2
Cancer3DTHUMPD2
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611751   
Orphanet
DisGeNETTHUMPD2
MedgenTHUMPD2
Genetic Testing Registry THUMPD2
NextProtQ9BTF0 [Medical]
GENETestsTHUMPD2
Target ValidationTHUMPD2
Huge Navigator THUMPD2 [HugePedia]
ClinGenTHUMPD2
Clinical trials, drugs, therapy
MyCancerGenomeTHUMPD2
Protein Interactions : CTDTHUMPD2
Pharm GKB GenePA134976355
PharosQ9BTF0
Clinical trialTHUMPD2
Miscellaneous
canSAR (ICR)THUMPD2
HarmonizomeTHUMPD2
DataMed IndexTHUMPD2
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTHUMPD2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 16:25:30 CEST 2021

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