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THUMPD2 (THUMP domain containing 2)

Identity

Alias_namesC2orf8
chromosome 2 open reading frame 8
Alias_symbol (synonym)MGC2454
Other alias
HGNC (Hugo) THUMPD2
LocusID (NCBI) 80745
Atlas_Id 74691
Location 2p22.1  [Link to chromosome band 2p22]
Location_base_pair Starts at 39736060 and ends at 39779276 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
THUMPD2 (2p22.1) / THUMPD2 (2p22.1)THUMPD2 (2p22.1) / VSNL1 (2p24.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)THUMPD2   14890
Cards
Entrez_Gene (NCBI)THUMPD2  80745  THUMP domain containing 2
AliasesC2orf8
GeneCards (Weizmann)THUMPD2
Ensembl hg19 (Hinxton)ENSG00000138050 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000138050 [Gene_View]  chr2:39736060-39779276 [Contig_View]  THUMPD2 [Vega]
ICGC DataPortalENSG00000138050
TCGA cBioPortalTHUMPD2
AceView (NCBI)THUMPD2
Genatlas (Paris)THUMPD2
WikiGenes80745
SOURCE (Princeton)THUMPD2
Genetics Home Reference (NIH)THUMPD2
Genomic and cartography
GoldenPath hg38 (UCSC)THUMPD2  -     chr2:39736060-39779276 -  2p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)THUMPD2  -     2p22.1   [Description]    (hg19-Feb_2009)
EnsemblTHUMPD2 - 2p22.1 [CytoView hg19]  THUMPD2 - 2p22.1 [CytoView hg38]
Mapping of homologs : NCBITHUMPD2 [Mapview hg19]  THUMPD2 [Mapview hg38]
OMIM611751   
Gene and transcription
Genbank (Entrez)AF380577 AF380578 AF380579 AK057801 AK093580
RefSeq transcript (Entrez)NM_001321468 NM_001321469 NM_001321470 NM_001321474 NM_001321475 NM_001321477 NM_001321478 NM_001321479 NM_001321480 NM_001321481 NM_025264
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)THUMPD2
Cluster EST : UnigeneHs.468254 [ NCBI ]
CGAP (NCI)Hs.468254
Alternative Splicing GalleryENSG00000138050
Gene ExpressionTHUMPD2 [ NCBI-GEO ]   THUMPD2 [ EBI - ARRAY_EXPRESS ]   THUMPD2 [ SEEK ]   THUMPD2 [ MEM ]
Gene Expression Viewer (FireBrowse)THUMPD2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80745
GTEX Portal (Tissue expression)THUMPD2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BTF0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BTF0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BTF0
Splice isoforms : SwissVarQ9BTF0
PhosPhoSitePlusQ9BTF0
Domaine pattern : Prosite (Expaxy)THUMP (PS51165)   
Domains : Interpro (EBI)RNA_methylase_dom    SAM-dependent_MTases    THUMP_dom   
Domain families : Pfam (Sanger)THUMP (PF02926)    UPF0020 (PF01170)   
Domain families : Pfam (NCBI)pfam02926    pfam01170   
Domain families : Smart (EMBL)THUMP (SM00981)  
Conserved Domain (NCBI)THUMPD2
DMDM Disease mutations80745
Blocks (Seattle)THUMPD2
SuperfamilyQ9BTF0
Human Protein AtlasENSG00000138050
Peptide AtlasQ9BTF0
HPRD15506
IPIIPI01015863   IPI00892786   IPI00892899   IPI00056556   IPI00019332   IPI00979720   
Protein Interaction databases
DIP (DOE-UCLA)Q9BTF0
IntAct (EBI)Q9BTF0
FunCoupENSG00000138050
BioGRIDTHUMPD2
STRING (EMBL)THUMPD2
ZODIACTHUMPD2
Ontologies - Pathways
QuickGOQ9BTF0
Ontology : AmiGORNA binding  methyltransferase activity  methylation  
Ontology : EGO-EBIRNA binding  methyltransferase activity  methylation  
NDEx NetworkTHUMPD2
Atlas of Cancer Signalling NetworkTHUMPD2
Wikipedia pathwaysTHUMPD2
Orthology - Evolution
OrthoDB80745
GeneTree (enSembl)ENSG00000138050
Phylogenetic Trees/Animal Genes : TreeFamTHUMPD2
HOVERGENQ9BTF0
HOGENOMQ9BTF0
Homologs : HomoloGeneTHUMPD2
Homology/Alignments : Family Browser (UCSC)THUMPD2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTHUMPD2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)THUMPD2
dbVarTHUMPD2
ClinVarTHUMPD2
1000_GenomesTHUMPD2 
Exome Variant ServerTHUMPD2
ExAC (Exome Aggregation Consortium)THUMPD2 (select the gene name)
Genetic variants : HAPMAP80745
Genomic Variants (DGV)THUMPD2 [DGVbeta]
DECIPHERTHUMPD2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTHUMPD2 
Mutations
ICGC Data PortalTHUMPD2 
TCGA Data PortalTHUMPD2 
Broad Tumor PortalTHUMPD2
OASIS PortalTHUMPD2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTHUMPD2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTHUMPD2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch THUMPD2
DgiDB (Drug Gene Interaction Database)THUMPD2
DoCM (Curated mutations)THUMPD2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)THUMPD2 (select a term)
intoGenTHUMPD2
Cancer3DTHUMPD2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611751   
Orphanet
MedgenTHUMPD2
Genetic Testing Registry THUMPD2
NextProtQ9BTF0 [Medical]
TSGene80745
GENETestsTHUMPD2
Target ValidationTHUMPD2
Huge Navigator THUMPD2 [HugePedia]
snp3D : Map Gene to Disease80745
BioCentury BCIQTHUMPD2
ClinGenTHUMPD2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80745
Chemical/Pharm GKB GenePA134976355
Clinical trialTHUMPD2
Miscellaneous
canSAR (ICR)THUMPD2 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTHUMPD2
EVEXTHUMPD2
GoPubMedTHUMPD2
iHOPTHUMPD2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:45:31 CEST 2017

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