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THUMPD3 (THUMP domain containing 3)

Identity

Alias (NCBI)-
HGNC (Hugo) THUMPD3
HGNC Alias symbDKFZP434F091
LocusID (NCBI) 25917
Atlas_Id 47307
Location 3p25.3  [Link to chromosome band 3p25]
Location_base_pair Starts at 9363054 and ends at 9386791 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)THUMPD3   24493
Cards
Entrez_Gene (NCBI)THUMPD3    THUMP domain containing 3
Aliases
GeneCards (Weizmann)THUMPD3
Ensembl hg19 (Hinxton)ENSG00000134077 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000134077 [Gene_View]  ENSG00000134077 [Sequence]  chr3:9363054-9386791 [Contig_View]  THUMPD3 [Vega]
ICGC DataPortalENSG00000134077
TCGA cBioPortalTHUMPD3
AceView (NCBI)THUMPD3
Genatlas (Paris)THUMPD3
SOURCE (Princeton)THUMPD3
Genetics Home Reference (NIH)THUMPD3
Genomic and cartography
GoldenPath hg38 (UCSC)THUMPD3  -     chr3:9363054-9386791 +  3p25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)THUMPD3  -     3p25.3   [Description]    (hg19-Feb_2009)
GoldenPathTHUMPD3 - 3p25.3 [CytoView hg19]  THUMPD3 - 3p25.3 [CytoView hg38]
ImmunoBaseENSG00000134077
Genome Data Viewer NCBITHUMPD3 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK001680 AK023263 AL080228 AL117483 BC001622
RefSeq transcript (Entrez)NM_001114092 NM_015453
Consensus coding sequences : CCDS (NCBI)THUMPD3
Gene ExpressionTHUMPD3 [ NCBI-GEO ]   THUMPD3 [ EBI - ARRAY_EXPRESS ]   THUMPD3 [ SEEK ]   THUMPD3 [ MEM ]
Gene Expression Viewer (FireBrowse)THUMPD3 [ Firebrowse - Broad ]
GenevisibleExpression of THUMPD3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)25917
GTEX Portal (Tissue expression)THUMPD3
Human Protein AtlasENSG00000134077-THUMPD3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BV44   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BV44  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BV44
PhosPhoSitePlusQ9BV44
Domaine pattern : Prosite (Expaxy)THUMP (PS51165)    UPF0020 (PS01261)   
Domains : Interpro (EBI)RNA_methylase_dom    SAM-dependent_MTases    THUMP_dom   
Domain families : Pfam (Sanger)THUMP (PF02926)    UPF0020 (PF01170)   
Domain families : Pfam (NCBI)pfam02926    pfam01170   
Domain families : Smart (EMBL)THUMP (SM00981)  
Conserved Domain (NCBI)THUMPD3
SuperfamilyQ9BV44
AlphaFold pdb e-kbQ9BV44   
Human Protein Atlas [tissue]ENSG00000134077-THUMPD3 [tissue]
HPRD15507
Protein Interaction databases
DIP (DOE-UCLA)Q9BV44
IntAct (EBI)Q9BV44
BioGRIDTHUMPD3
STRING (EMBL)THUMPD3
ZODIACTHUMPD3
Ontologies - Pathways
QuickGOQ9BV44
Ontology : AmiGORNA binding  protein binding  nucleolus  cytosol  tRNA (guanine) methyltransferase activity  tRNA methylation  
Ontology : EGO-EBIRNA binding  protein binding  nucleolus  cytosol  tRNA (guanine) methyltransferase activity  tRNA methylation  
NDEx NetworkTHUMPD3
Atlas of Cancer Signalling NetworkTHUMPD3
Wikipedia pathwaysTHUMPD3
Orthology - Evolution
OrthoDB25917
GeneTree (enSembl)ENSG00000134077
Phylogenetic Trees/Animal Genes : TreeFamTHUMPD3
Homologs : HomoloGeneTHUMPD3
Homology/Alignments : Family Browser (UCSC)THUMPD3
Gene fusions - Rearrangements
Fusion : QuiverTHUMPD3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTHUMPD3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)THUMPD3
dbVarTHUMPD3
ClinVarTHUMPD3
MonarchTHUMPD3
1000_GenomesTHUMPD3 
Exome Variant ServerTHUMPD3
GNOMAD BrowserENSG00000134077
Varsome BrowserTHUMPD3
ACMGTHUMPD3 variants
VarityQ9BV44
Genomic Variants (DGV)THUMPD3 [DGVbeta]
DECIPHERTHUMPD3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTHUMPD3 
Mutations
ICGC Data PortalTHUMPD3 
TCGA Data PortalTHUMPD3 
Broad Tumor PortalTHUMPD3
OASIS PortalTHUMPD3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTHUMPD3  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTHUMPD3
Mutations and Diseases : HGMDTHUMPD3
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTHUMPD3
DgiDB (Drug Gene Interaction Database)THUMPD3
DoCM (Curated mutations)THUMPD3
CIViC (Clinical Interpretations of Variants in Cancer)THUMPD3
Cancer3DTHUMPD3
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTHUMPD3
MedgenTHUMPD3
Genetic Testing Registry THUMPD3
NextProtQ9BV44 [Medical]
GENETestsTHUMPD3
Target ValidationTHUMPD3
Huge Navigator THUMPD3 [HugePedia]
ClinGenTHUMPD3
Clinical trials, drugs, therapy
MyCancerGenomeTHUMPD3
Protein Interactions : CTDTHUMPD3
Pharm GKB GenePA134969445
PharosQ9BV44
Clinical trialTHUMPD3
Miscellaneous
canSAR (ICR)THUMPD3
HarmonizomeTHUMPD3
DataMed IndexTHUMPD3
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTHUMPD3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:35:04 CEST 2021

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