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THUMPD3 (THUMP domain containing 3)

Identity

Alias_symbol (synonym)DKFZP434F091
Other alias-
HGNC (Hugo) THUMPD3
LocusID (NCBI) 25917
Atlas_Id 47307
Location 3p25.3  [Link to chromosome band 3p25]
Location_base_pair Starts at 9363033 and ends at 9386791 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)THUMPD3   24493
Cards
Entrez_Gene (NCBI)THUMPD3  25917  THUMP domain containing 3
Aliases
GeneCards (Weizmann)THUMPD3
Ensembl hg19 (Hinxton)ENSG00000134077 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000134077 [Gene_View]  chr3:9363033-9386791 [Contig_View]  THUMPD3 [Vega]
ICGC DataPortalENSG00000134077
TCGA cBioPortalTHUMPD3
AceView (NCBI)THUMPD3
Genatlas (Paris)THUMPD3
WikiGenes25917
SOURCE (Princeton)THUMPD3
Genetics Home Reference (NIH)THUMPD3
Genomic and cartography
GoldenPath hg38 (UCSC)THUMPD3  -     chr3:9363033-9386791 +  3p25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)THUMPD3  -     3p25.3   [Description]    (hg19-Feb_2009)
EnsemblTHUMPD3 - 3p25.3 [CytoView hg19]  THUMPD3 - 3p25.3 [CytoView hg38]
Mapping of homologs : NCBITHUMPD3 [Mapview hg19]  THUMPD3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK001680 AK023263 AL080228 AL117483 BC001622
RefSeq transcript (Entrez)NM_001114092 NM_015453
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)THUMPD3
Cluster EST : UnigeneHs.443081 [ NCBI ]
CGAP (NCI)Hs.443081
Alternative Splicing GalleryENSG00000134077
Gene ExpressionTHUMPD3 [ NCBI-GEO ]   THUMPD3 [ EBI - ARRAY_EXPRESS ]   THUMPD3 [ SEEK ]   THUMPD3 [ MEM ]
Gene Expression Viewer (FireBrowse)THUMPD3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)25917
GTEX Portal (Tissue expression)THUMPD3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BV44   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BV44  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BV44
Splice isoforms : SwissVarQ9BV44
PhosPhoSitePlusQ9BV44
Domaine pattern : Prosite (Expaxy)THUMP (PS51165)    UPF0020 (PS01261)   
Domains : Interpro (EBI)RNA_methylase_dom    SAM-dependent_MTases    THUMP_dom   
Domain families : Pfam (Sanger)THUMP (PF02926)    UPF0020 (PF01170)   
Domain families : Pfam (NCBI)pfam02926    pfam01170   
Domain families : Smart (EMBL)THUMP (SM00981)  
Conserved Domain (NCBI)THUMPD3
DMDM Disease mutations25917
Blocks (Seattle)THUMPD3
SuperfamilyQ9BV44
Human Protein AtlasENSG00000134077
Peptide AtlasQ9BV44
HPRD15507
IPIIPI00306127   IPI00925331   IPI00924654   IPI00924884   IPI00926808   
Protein Interaction databases
DIP (DOE-UCLA)Q9BV44
IntAct (EBI)Q9BV44
FunCoupENSG00000134077
BioGRIDTHUMPD3
STRING (EMBL)THUMPD3
ZODIACTHUMPD3
Ontologies - Pathways
QuickGOQ9BV44
Ontology : AmiGORNA binding  nucleolus  cytosol  methyltransferase activity  methylation  
Ontology : EGO-EBIRNA binding  nucleolus  cytosol  methyltransferase activity  methylation  
NDEx NetworkTHUMPD3
Atlas of Cancer Signalling NetworkTHUMPD3
Wikipedia pathwaysTHUMPD3
Orthology - Evolution
OrthoDB25917
GeneTree (enSembl)ENSG00000134077
Phylogenetic Trees/Animal Genes : TreeFamTHUMPD3
HOVERGENQ9BV44
HOGENOMQ9BV44
Homologs : HomoloGeneTHUMPD3
Homology/Alignments : Family Browser (UCSC)THUMPD3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTHUMPD3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)THUMPD3
dbVarTHUMPD3
ClinVarTHUMPD3
1000_GenomesTHUMPD3 
Exome Variant ServerTHUMPD3
ExAC (Exome Aggregation Consortium)THUMPD3 (select the gene name)
Genetic variants : HAPMAP25917
Genomic Variants (DGV)THUMPD3 [DGVbeta]
DECIPHERTHUMPD3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTHUMPD3 
Mutations
ICGC Data PortalTHUMPD3 
TCGA Data PortalTHUMPD3 
Broad Tumor PortalTHUMPD3
OASIS PortalTHUMPD3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTHUMPD3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTHUMPD3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch THUMPD3
DgiDB (Drug Gene Interaction Database)THUMPD3
DoCM (Curated mutations)THUMPD3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)THUMPD3 (select a term)
intoGenTHUMPD3
Cancer3DTHUMPD3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTHUMPD3
Genetic Testing Registry THUMPD3
NextProtQ9BV44 [Medical]
TSGene25917
GENETestsTHUMPD3
Target ValidationTHUMPD3
Huge Navigator THUMPD3 [HugePedia]
snp3D : Map Gene to Disease25917
BioCentury BCIQTHUMPD3
ClinGenTHUMPD3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD25917
Chemical/Pharm GKB GenePA134969445
Clinical trialTHUMPD3
Miscellaneous
canSAR (ICR)THUMPD3 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTHUMPD3
EVEXTHUMPD3
GoPubMedTHUMPD3
iHOPTHUMPD3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:35:00 CEST 2017

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