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THYN1 (thymocyte nuclear protein 1)

Identity

Alias_symbol (synonym)THY28
Other aliasHSPC144
MDS012
MY105
THY28KD
HGNC (Hugo) THYN1
LocusID (NCBI) 29087
Atlas_Id 74693
Location 11q25  [Link to chromosome band 11q25]
Location_base_pair Starts at 134118173 and ends at 134123260 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)THYN1   29560
Cards
Entrez_Gene (NCBI)THYN1  29087  thymocyte nuclear protein 1
AliasesHSPC144; MDS012; MY105; THY28; 
THY28KD
GeneCards (Weizmann)THYN1
Ensembl hg19 (Hinxton)ENSG00000151500 [Gene_View]  chr11:134118173-134123260 [Contig_View]  THYN1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000151500 [Gene_View]  chr11:134118173-134123260 [Contig_View]  THYN1 [Vega]
ICGC DataPortalENSG00000151500
TCGA cBioPortalTHYN1
AceView (NCBI)THYN1
Genatlas (Paris)THYN1
WikiGenes29087
SOURCE (Princeton)THYN1
Genetics Home Reference (NIH)THYN1
Genomic and cartography
GoldenPath hg19 (UCSC)THYN1  -     chr11:134118173-134123260 -  11q25   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)THYN1  -     11q25   [Description]    (hg38-Dec_2013)
EnsemblTHYN1 - 11q25 [CytoView hg19]  THYN1 - 11q25 [CytoView hg38]
Mapping of homologs : NCBITHYN1 [Mapview hg19]  THYN1 [Mapview hg38]
OMIM613739   
Gene and transcription
Genbank (Entrez)AF059619 AF087886 AF161493 AF182413 AK308498
RefSeq transcript (Entrez)NM_001037304 NM_001037305 NM_014174 NM_199297 NM_199298
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_033899 NW_004929381
Consensus coding sequences : CCDS (NCBI)THYN1
Cluster EST : UnigeneHs.13645 [ NCBI ]
CGAP (NCI)Hs.13645
Alternative Splicing GalleryENSG00000151500
Gene ExpressionTHYN1 [ NCBI-GEO ]   THYN1 [ EBI - ARRAY_EXPRESS ]   THYN1 [ SEEK ]   THYN1 [ MEM ]
Gene Expression Viewer (FireBrowse)THYN1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29087
GTEX Portal (Tissue expression)THYN1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P016   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P016  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P016
Splice isoforms : SwissVarQ9P016
PhosPhoSitePlusQ9P016
Domains : Interpro (EBI)EVE_domain    PUA-like_domain   
Domain families : Pfam (Sanger)EVE (PF01878)   
Domain families : Pfam (NCBI)pfam01878   
Conserved Domain (NCBI)THYN1
DMDM Disease mutations29087
Blocks (Seattle)THYN1
PDB (SRS)3EOP   
PDB (PDBSum)3EOP   
PDB (IMB)3EOP   
PDB (RSDB)3EOP   
Structural Biology KnowledgeBase3EOP   
SCOP (Structural Classification of Proteins)3EOP   
CATH (Classification of proteins structures)3EOP   
SuperfamilyQ9P016
Human Protein AtlasENSG00000151500
Peptide AtlasQ9P016
HPRD18183
IPIIPI00383163   IPI00399375   IPI00977279   
Protein Interaction databases
DIP (DOE-UCLA)Q9P016
IntAct (EBI)Q9P016
FunCoupENSG00000151500
BioGRIDTHYN1
STRING (EMBL)THYN1
ZODIACTHYN1
Ontologies - Pathways
QuickGOQ9P016
Ontology : AmiGOnucleus  nucleus  nucleolus  cytoplasm  
Ontology : EGO-EBInucleus  nucleus  nucleolus  cytoplasm  
NDEx NetworkTHYN1
Atlas of Cancer Signalling NetworkTHYN1
Wikipedia pathwaysTHYN1
Orthology - Evolution
OrthoDB29087
GeneTree (enSembl)ENSG00000151500
Phylogenetic Trees/Animal Genes : TreeFamTHYN1
HOVERGENQ9P016
HOGENOMQ9P016
Homologs : HomoloGeneTHYN1
Homology/Alignments : Family Browser (UCSC)THYN1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTHYN1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)THYN1
dbVarTHYN1
ClinVarTHYN1
1000_GenomesTHYN1 
Exome Variant ServerTHYN1
ExAC (Exome Aggregation Consortium)THYN1 (select the gene name)
Genetic variants : HAPMAP29087
Genomic Variants (DGV)THYN1 [DGVbeta]
DECIPHER (Syndromes)11:134118173-134123260  ENSG00000151500
CONAN: Copy Number AnalysisTHYN1 
Mutations
ICGC Data PortalTHYN1 
TCGA Data PortalTHYN1 
Broad Tumor PortalTHYN1
OASIS PortalTHYN1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTHYN1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTHYN1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch THYN1
DgiDB (Drug Gene Interaction Database)THYN1
DoCM (Curated mutations)THYN1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)THYN1 (select a term)
intoGenTHYN1
Cancer3DTHYN1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613739   
Orphanet
MedgenTHYN1
Genetic Testing Registry THYN1
NextProtQ9P016 [Medical]
TSGene29087
GENETestsTHYN1
Huge Navigator THYN1 [HugePedia]
snp3D : Map Gene to Disease29087
BioCentury BCIQTHYN1
ClinGenTHYN1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD29087
Chemical/Pharm GKB GenePA128394653
Clinical trialTHYN1
Miscellaneous
canSAR (ICR)THYN1 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTHYN1
EVEXTHYN1
GoPubMedTHYN1
iHOPTHYN1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:48:06 CET 2017

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