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TIAF1 (TGFB1-induced anti-apoptotic factor 1)

Identity

Other aliasMAJN
SPR210
HGNC (Hugo) TIAF1
LocusID (NCBI) 9220
Atlas_Id 42556
Location 17q11.2  [Link to chromosome band 17q11]
Location_base_pair Starts at 27400539 and ends at 27402627 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
FOXK2 (17q25.3) / TIAF1 (17q11.2)TIAF1 (17q11.2) / FGFR1 (8p11.23)TIAF1 (17q11.2) / LRRC37B (17q11.2)
FOXK2 17q25.3 / TIAF1 17q11.2TIAF1 17q11.2 / LRRC37B 17q11.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TIAF1   11803
Cards
Entrez_Gene (NCBI)TIAF1  9220  TGFB1-induced anti-apoptotic factor 1
AliasesMAJN; SPR210
GeneCards (Weizmann)TIAF1
Ensembl hg19 (Hinxton)ENSG00000221995 [Gene_View]  chr17:27400539-27402627 [Contig_View]  TIAF1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000221995 [Gene_View]  chr17:27400539-27402627 [Contig_View]  TIAF1 [Vega]
ICGC DataPortalENSG00000221995
TCGA cBioPortalTIAF1
AceView (NCBI)TIAF1
Genatlas (Paris)TIAF1
WikiGenes9220
SOURCE (Princeton)TIAF1
Genetics Home Reference (NIH)TIAF1
Genomic and cartography
GoldenPath hg19 (UCSC)TIAF1  -     chr17:27400539-27402627 -  17q11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TIAF1  -     17q11.2   [Description]    (hg38-Dec_2013)
EnsemblTIAF1 - 17q11.2 [CytoView hg19]  TIAF1 - 17q11.2 [CytoView hg38]
Mapping of homologs : NCBITIAF1 [Mapview hg19]  TIAF1 [Mapview hg38]
OMIM609517   
Gene and transcription
Genbank (Entrez)AF105277 AK054958 AK126861 BC047669 BC058075
RefSeq transcript (Entrez)NM_004740
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010783 NW_004929407
Consensus coding sequences : CCDS (NCBI)TIAF1
Cluster EST : UnigeneHs.743384 [ NCBI ]
CGAP (NCI)Hs.743384
Alternative Splicing GalleryENSG00000221995
Gene ExpressionTIAF1 [ NCBI-GEO ]   TIAF1 [ EBI - ARRAY_EXPRESS ]   TIAF1 [ SEEK ]   TIAF1 [ MEM ]
Gene Expression Viewer (FireBrowse)TIAF1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9220
GTEX Portal (Tissue expression)TIAF1
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95411   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95411  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95411
Splice isoforms : SwissVarO95411
PhosPhoSitePlusO95411
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TIAF1
DMDM Disease mutations9220
Blocks (Seattle)TIAF1
SuperfamilyO95411
Human Protein AtlasENSG00000221995
Peptide AtlasO95411
HPRD10268
IPIIPI00294690   
Protein Interaction databases
DIP (DOE-UCLA)O95411
IntAct (EBI)O95411
FunCoupENSG00000221995
BioGRIDTIAF1
STRING (EMBL)TIAF1
ZODIACTIAF1
Ontologies - Pathways
QuickGOO95411
Ontology : AmiGOmolecular_function  nucleus  apoptotic process  I-kappaB kinase/NF-kappaB signaling  negative regulation of apoptotic process  
Ontology : EGO-EBImolecular_function  nucleus  apoptotic process  I-kappaB kinase/NF-kappaB signaling  negative regulation of apoptotic process  
NDEx NetworkTIAF1
Atlas of Cancer Signalling NetworkTIAF1
Wikipedia pathwaysTIAF1
Orthology - Evolution
OrthoDB9220
GeneTree (enSembl)ENSG00000221995
Phylogenetic Trees/Animal Genes : TreeFamTIAF1
HOVERGENO95411
HOGENOMO95411
Homologs : HomoloGeneTIAF1
Homology/Alignments : Family Browser (UCSC)TIAF1
Gene fusions - Rearrangements
Fusion : MitelmanFOXK2/TIAF1 [17q25.3/17q11.2]  [t(17;17)(q11;q25)]  
Fusion : MitelmanTIAF1/LRRC37B [17q11.2/17q11.2]  [t(17;17)(q11;q11)]  
Fusion: TCGAFOXK2 17q25.3 TIAF1 17q11.2 BRCA
Fusion: TCGATIAF1 17q11.2 LRRC37B 17q11.2 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTIAF1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TIAF1
dbVarTIAF1
ClinVarTIAF1
1000_GenomesTIAF1 
Exome Variant ServerTIAF1
ExAC (Exome Aggregation Consortium)TIAF1 (select the gene name)
Genetic variants : HAPMAP9220
Genomic Variants (DGV)TIAF1 [DGVbeta]
DECIPHER (Syndromes)17:27400539-27402627  ENSG00000221995
CONAN: Copy Number AnalysisTIAF1 
Mutations
ICGC Data PortalTIAF1 
TCGA Data PortalTIAF1 
Broad Tumor PortalTIAF1
OASIS PortalTIAF1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTIAF1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTIAF1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TIAF1
DgiDB (Drug Gene Interaction Database)TIAF1
DoCM (Curated mutations)TIAF1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TIAF1 (select a term)
intoGenTIAF1
Cancer3DTIAF1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609517   
Orphanet
MedgenTIAF1
Genetic Testing Registry TIAF1
NextProtO95411 [Medical]
TSGene9220
GENETestsTIAF1
Huge Navigator TIAF1 [HugePedia]
snp3D : Map Gene to Disease9220
BioCentury BCIQTIAF1
ClinGenTIAF1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9220
Chemical/Pharm GKB GenePA36512
Clinical trialTIAF1
Miscellaneous
canSAR (ICR)TIAF1 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTIAF1
EVEXTIAF1
GoPubMedTIAF1
iHOPTIAF1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:31:05 CET 2017

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