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TIFA (TRAF interacting protein with forkhead associated domain)

Identity

Alias_namesTRAF-interacting protein with forkhead-associated domain
Alias_symbol (synonym)MGC20791
T2BP
T6BP
TIFAA
Other alias
HGNC (Hugo) TIFA
LocusID (NCBI) 92610
Atlas_Id 74695
Location 4q25  [Link to chromosome band 4q25]
Location_base_pair Starts at 112275626 and ends at 112285903 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TIFA   19075
Cards
Entrez_Gene (NCBI)TIFA  92610  TRAF interacting protein with forkhead associated domain
AliasesT2BP; T6BP; TIFAA
GeneCards (Weizmann)TIFA
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr4:112275626-112285903 [Contig_View]  TIFA [Vega]
TCGA cBioPortalTIFA
AceView (NCBI)TIFA
Genatlas (Paris)TIFA
WikiGenes92610
SOURCE (Princeton)TIFA
Genetics Home Reference (NIH)TIFA
Genomic and cartography
GoldenPath hg38 (UCSC)TIFA  -     chr4:112275626-112285903 -  4q25   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TIFA  -     4q25   [Description]    (hg19-Feb_2009)
EnsemblTIFA - 4q25 [CytoView hg19]  TIFA - 4q25 [CytoView hg38]
Mapping of homologs : NCBITIFA [Mapview hg19]  TIFA [Mapview hg38]
OMIM609028   
Gene and transcription
Genbank (Entrez)AB062110 AB097011 AB097038 AK292900 BC008294
RefSeq transcript (Entrez)NM_052864
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TIFA
Cluster EST : UnigeneHs.310640 [ NCBI ]
CGAP (NCI)Hs.310640
Gene ExpressionTIFA [ NCBI-GEO ]   TIFA [ EBI - ARRAY_EXPRESS ]   TIFA [ SEEK ]   TIFA [ MEM ]
Gene Expression Viewer (FireBrowse)TIFA [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)92610
GTEX Portal (Tissue expression)TIFA
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96CG3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96CG3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96CG3
Splice isoforms : SwissVarQ96CG3
PhosPhoSitePlusQ96CG3
Domaine pattern : Prosite (Expaxy)FHA_DOMAIN (PS50006)   
Domains : Interpro (EBI)FHA_dom    SMAD_FHA_domain    TIFA   
Domain families : Pfam (Sanger)FHA (PF00498)   
Domain families : Pfam (NCBI)pfam00498   
Conserved Domain (NCBI)TIFA
DMDM Disease mutations92610
Blocks (Seattle)TIFA
PDB (SRS)4YM4    4ZGI   
PDB (PDBSum)4YM4    4ZGI   
PDB (IMB)4YM4    4ZGI   
PDB (RSDB)4YM4    4ZGI   
Structural Biology KnowledgeBase4YM4    4ZGI   
SCOP (Structural Classification of Proteins)4YM4    4ZGI   
CATH (Classification of proteins structures)4YM4    4ZGI   
SuperfamilyQ96CG3
Peptide AtlasQ96CG3
HPRD09835
IPIIPI00060419   IPI00940424   
Protein Interaction databases
DIP (DOE-UCLA)Q96CG3
IntAct (EBI)Q96CG3
BioGRIDTIFA
STRING (EMBL)TIFA
ZODIACTIFA
Ontologies - Pathways
QuickGOQ96CG3
Ontology : AmiGOprotein binding  intracellular  I-kappaB kinase/NF-kappaB signaling  
Ontology : EGO-EBIprotein binding  intracellular  I-kappaB kinase/NF-kappaB signaling  
NDEx NetworkTIFA
Atlas of Cancer Signalling NetworkTIFA
Wikipedia pathwaysTIFA
Orthology - Evolution
OrthoDB92610
Phylogenetic Trees/Animal Genes : TreeFamTIFA
HOVERGENQ96CG3
HOGENOMQ96CG3
Homologs : HomoloGeneTIFA
Homology/Alignments : Family Browser (UCSC)TIFA
Gene fusions - Rearrangements
Tumor Fusion PortalTIFA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTIFA [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TIFA
dbVarTIFA
ClinVarTIFA
1000_GenomesTIFA 
Exome Variant ServerTIFA
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP92610
Genomic Variants (DGV)TIFA [DGVbeta]
DECIPHERTIFA [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTIFA 
Mutations
ICGC Data PortalTIFA 
TCGA Data PortalTIFA 
Broad Tumor PortalTIFA
OASIS PortalTIFA [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTIFA  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTIFA
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TIFA
DgiDB (Drug Gene Interaction Database)TIFA
DoCM (Curated mutations)TIFA (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TIFA (select a term)
intoGenTIFA
Cancer3DTIFA(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609028   
Orphanet
DisGeNETTIFA
MedgenTIFA
Genetic Testing Registry TIFA
NextProtQ96CG3 [Medical]
TSGene92610
GENETestsTIFA
Target ValidationTIFA
Huge Navigator TIFA [HugePedia]
snp3D : Map Gene to Disease92610
BioCentury BCIQTIFA
ClinGenTIFA
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD92610
Chemical/Pharm GKB GenePA162405777
Clinical trialTIFA
Miscellaneous
canSAR (ICR)TIFA (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTIFA
EVEXTIFA
GoPubMedTIFA
iHOPTIFA
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:11:02 CET 2017

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