Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TIFAB (TIFA inhibitor)

Identity

Alias_namesTRAF-interacting protein with forkhead-associated domain, family member B
Other alias-
HGNC (Hugo) TIFAB
LocusID (NCBI) 497189
Atlas_Id 74696
Location 5q31.1  [Link to chromosome band 5q31]
Location_base_pair Starts at 135448868 and ends at 135452399 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TIFAB   34024
Cards
Entrez_Gene (NCBI)TIFAB  497189  TIFA inhibitor
Aliases
GeneCards (Weizmann)TIFAB
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr5:135448868-135452399 [Contig_View]  TIFAB [Vega]
TCGA cBioPortalTIFAB
AceView (NCBI)TIFAB
Genatlas (Paris)TIFAB
WikiGenes497189
SOURCE (Princeton)TIFAB
Genetics Home Reference (NIH)TIFAB
Genomic and cartography
GoldenPath hg38 (UCSC)TIFAB  -     chr5:135448868-135452399 -  5q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TIFAB  -     5q31.1   [Description]    (hg19-Feb_2009)
EnsemblTIFAB - 5q31.1 [CytoView hg19]  TIFAB - 5q31.1 [CytoView hg38]
Mapping of homologs : NCBITIFAB [Mapview hg19]  TIFAB [Mapview hg38]
OMIM612663   
Gene and transcription
Genbank (Entrez)AB161513 BX119085
RefSeq transcript (Entrez)NM_001099221
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TIFAB
Cluster EST : UnigeneHs.552091 [ NCBI ]
CGAP (NCI)Hs.552091
Gene ExpressionTIFAB [ NCBI-GEO ]   TIFAB [ EBI - ARRAY_EXPRESS ]   TIFAB [ SEEK ]   TIFAB [ MEM ]
Gene Expression Viewer (FireBrowse)TIFAB [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)497189
GTEX Portal (Tissue expression)TIFAB
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZNK6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZNK6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZNK6
Splice isoforms : SwissVarQ6ZNK6
PhosPhoSitePlusQ6ZNK6
Domains : Interpro (EBI)FHA_dom    SMAD_FHA_domain    TIFA   
Domain families : Pfam (Sanger)FHA (PF00498)   
Domain families : Pfam (NCBI)pfam00498   
Conserved Domain (NCBI)TIFAB
DMDM Disease mutations497189
Blocks (Seattle)TIFAB
SuperfamilyQ6ZNK6
Peptide AtlasQ6ZNK6
IPIIPI00878465   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZNK6
IntAct (EBI)Q6ZNK6
BioGRIDTIFAB
STRING (EMBL)TIFAB
ZODIACTIFAB
Ontologies - Pathways
QuickGOQ6ZNK6
Ontology : AmiGOintracellular  I-kappaB kinase/NF-kappaB signaling  thorax and anterior abdomen determination  trigeminal nerve development  vestibulocochlear nerve formation  peristalsis  auditory behavior  genitalia morphogenesis  inner ear morphogenesis  regulation of muscle organ development  genitalia development  inner ear development  neuromuscular process controlling balance  palate development  mastication  cochlea development  cochlea morphogenesis  craniofacial suture morphogenesis  learned vocalization behavior  negative regulation of relaxation of muscle  negative regulation of saliva secretion  hard palate morphogenesis  
Ontology : EGO-EBIintracellular  I-kappaB kinase/NF-kappaB signaling  thorax and anterior abdomen determination  trigeminal nerve development  vestibulocochlear nerve formation  peristalsis  auditory behavior  genitalia morphogenesis  inner ear morphogenesis  regulation of muscle organ development  genitalia development  inner ear development  neuromuscular process controlling balance  palate development  mastication  cochlea development  cochlea morphogenesis  craniofacial suture morphogenesis  learned vocalization behavior  negative regulation of relaxation of muscle  negative regulation of saliva secretion  hard palate morphogenesis  
NDEx NetworkTIFAB
Atlas of Cancer Signalling NetworkTIFAB
Wikipedia pathwaysTIFAB
Orthology - Evolution
OrthoDB497189
Phylogenetic Trees/Animal Genes : TreeFamTIFAB
HOVERGENQ6ZNK6
HOGENOMQ6ZNK6
Homologs : HomoloGeneTIFAB
Homology/Alignments : Family Browser (UCSC)TIFAB
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTIFAB [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TIFAB
dbVarTIFAB
ClinVarTIFAB
1000_GenomesTIFAB 
Exome Variant ServerTIFAB
ExAC (Exome Aggregation Consortium)TIFAB (select the gene name)
Genetic variants : HAPMAP497189
Genomic Variants (DGV)TIFAB [DGVbeta]
DECIPHERTIFAB [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTIFAB 
Mutations
ICGC Data PortalTIFAB 
TCGA Data PortalTIFAB 
Broad Tumor PortalTIFAB
OASIS PortalTIFAB [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTIFAB  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTIFAB
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TIFAB
DgiDB (Drug Gene Interaction Database)TIFAB
DoCM (Curated mutations)TIFAB (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TIFAB (select a term)
intoGenTIFAB
Cancer3DTIFAB(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612663   
Orphanet
MedgenTIFAB
Genetic Testing Registry TIFAB
NextProtQ6ZNK6 [Medical]
TSGene497189
GENETestsTIFAB
Target ValidationTIFAB
Huge Navigator TIFAB [HugePedia]
snp3D : Map Gene to Disease497189
BioCentury BCIQTIFAB
ClinGenTIFAB
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD497189
Chemical/Pharm GKB GenePA162405786
Clinical trialTIFAB
Miscellaneous
canSAR (ICR)TIFAB (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTIFAB
EVEXTIFAB
GoPubMedTIFAB
iHOPTIFAB
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:45:32 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.