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TIFAB (TIFA inhibitor)

Identity

Alias (NCBI)-
HGNC (Hugo) TIFAB
HGNC Previous nameTRAF-interacting protein with forkhead-associated domain, family member B
LocusID (NCBI) 497189
Atlas_Id 74696
Location 5q31.1  [Link to chromosome band 5q31]
Location_base_pair Starts at 135444226 and ends at 135452351 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TIFAB   34024
Cards
Entrez_Gene (NCBI)TIFAB    TIFA inhibitor
Aliases
GeneCards (Weizmann)TIFAB
Ensembl hg19 (Hinxton)ENSG00000255833 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000255833 [Gene_View]  ENSG00000255833 [Sequence]  chr5:135444226-135452351 [Contig_View]  TIFAB [Vega]
ICGC DataPortalENSG00000255833
TCGA cBioPortalTIFAB
AceView (NCBI)TIFAB
Genatlas (Paris)TIFAB
SOURCE (Princeton)TIFAB
Genetics Home Reference (NIH)TIFAB
Genomic and cartography
GoldenPath hg38 (UCSC)TIFAB  -     chr5:135444226-135452351 -  5q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TIFAB  -     5q31.1   [Description]    (hg19-Feb_2009)
GoldenPathTIFAB - 5q31.1 [CytoView hg19]  TIFAB - 5q31.1 [CytoView hg38]
ImmunoBaseENSG00000255833
Genome Data Viewer NCBITIFAB [Mapview hg19]  
OMIM612663   
Gene and transcription
Genbank (Entrez)AB161513 BX119085
RefSeq transcript (Entrez)NM_001099221
Consensus coding sequences : CCDS (NCBI)TIFAB
Gene ExpressionTIFAB [ NCBI-GEO ]   TIFAB [ EBI - ARRAY_EXPRESS ]   TIFAB [ SEEK ]   TIFAB [ MEM ]
Gene Expression Viewer (FireBrowse)TIFAB [ Firebrowse - Broad ]
GenevisibleExpression of TIFAB in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)497189
GTEX Portal (Tissue expression)TIFAB
Human Protein AtlasENSG00000255833-TIFAB [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZNK6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZNK6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZNK6
PhosPhoSitePlusQ6ZNK6
Domains : Interpro (EBI)FHA_dom    SMAD_FHA_dom_sf    TIFA   
Domain families : Pfam (Sanger)FHA (PF00498)   
Domain families : Pfam (NCBI)pfam00498   
Conserved Domain (NCBI)TIFAB
SuperfamilyQ6ZNK6
AlphaFold pdb e-kbQ6ZNK6   
Human Protein Atlas [tissue]ENSG00000255833-TIFAB [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q6ZNK6
IntAct (EBI)Q6ZNK6
BioGRIDTIFAB
STRING (EMBL)TIFAB
ZODIACTIFAB
Ontologies - Pathways
QuickGOQ6ZNK6
Ontology : AmiGOprotein binding  I-kappaB kinase/NF-kappaB signaling  thorax and anterior abdomen determination  trigeminal nerve development  vestibulocochlear nerve formation  peristalsis  auditory behavior  genitalia morphogenesis  inner ear morphogenesis  regulation of muscle organ development  genitalia development  inner ear development  neuromuscular process controlling balance  mastication  cochlea development  cochlea morphogenesis  craniofacial suture morphogenesis  learned vocalization behavior  negative regulation of relaxation of muscle  negative regulation of saliva secretion  hard palate morphogenesis  
Ontology : EGO-EBIprotein binding  I-kappaB kinase/NF-kappaB signaling  thorax and anterior abdomen determination  trigeminal nerve development  vestibulocochlear nerve formation  peristalsis  auditory behavior  genitalia morphogenesis  inner ear morphogenesis  regulation of muscle organ development  genitalia development  inner ear development  neuromuscular process controlling balance  mastication  cochlea development  cochlea morphogenesis  craniofacial suture morphogenesis  learned vocalization behavior  negative regulation of relaxation of muscle  negative regulation of saliva secretion  hard palate morphogenesis  
NDEx NetworkTIFAB
Atlas of Cancer Signalling NetworkTIFAB
Wikipedia pathwaysTIFAB
Orthology - Evolution
OrthoDB497189
GeneTree (enSembl)ENSG00000255833
Phylogenetic Trees/Animal Genes : TreeFamTIFAB
Homologs : HomoloGeneTIFAB
Homology/Alignments : Family Browser (UCSC)TIFAB
Gene fusions - Rearrangements
Fusion : QuiverTIFAB
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTIFAB [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TIFAB
dbVarTIFAB
ClinVarTIFAB
MonarchTIFAB
1000_GenomesTIFAB 
Exome Variant ServerTIFAB
GNOMAD BrowserENSG00000255833
Varsome BrowserTIFAB
ACMGTIFAB variants
VarityQ6ZNK6
Genomic Variants (DGV)TIFAB [DGVbeta]
DECIPHERTIFAB [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTIFAB 
Mutations
ICGC Data PortalTIFAB 
TCGA Data PortalTIFAB 
Broad Tumor PortalTIFAB
OASIS PortalTIFAB [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTIFAB  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTIFAB
Mutations and Diseases : HGMDTIFAB
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTIFAB
DgiDB (Drug Gene Interaction Database)TIFAB
DoCM (Curated mutations)TIFAB
CIViC (Clinical Interpretations of Variants in Cancer)TIFAB
Cancer3DTIFAB
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612663   
Orphanet
DisGeNETTIFAB
MedgenTIFAB
Genetic Testing Registry TIFAB
NextProtQ6ZNK6 [Medical]
GENETestsTIFAB
Target ValidationTIFAB
Huge Navigator TIFAB [HugePedia]
ClinGenTIFAB
Clinical trials, drugs, therapy
MyCancerGenomeTIFAB
Protein Interactions : CTDTIFAB
Pharm GKB GenePA162405786
PharosQ6ZNK6
Clinical trialTIFAB
Miscellaneous
canSAR (ICR)TIFAB
HarmonizomeTIFAB
DataMed IndexTIFAB
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTIFAB
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 16:25:31 CEST 2021

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