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TIGD1 (tigger transposable element derived 1)

Identity

Alias (NCBI)EEYORE
HGNC (Hugo) TIGD1
HGNC Alias symbEEYORE
LocusID (NCBI) 200765
Atlas_Id 74697
Location 2q37.1  [Link to chromosome band 2q37]
Location_base_pair Starts at 232543883 and ends at 232550557 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TIGD1   14523
Cards
Entrez_Gene (NCBI)TIGD1    tigger transposable element derived 1
AliasesEEYORE
GeneCards (Weizmann)TIGD1
Ensembl hg19 (Hinxton)ENSG00000221944 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000221944 [Gene_View]  ENSG00000221944 [Sequence]  chr2:232543883-232550557 [Contig_View]  TIGD1 [Vega]
ICGC DataPortalENSG00000221944
TCGA cBioPortalTIGD1
AceView (NCBI)TIGD1
Genatlas (Paris)TIGD1
SOURCE (Princeton)TIGD1
Genetics Home Reference (NIH)TIGD1
Genomic and cartography
GoldenPath hg38 (UCSC)TIGD1  -     chr2:232543883-232550557 -  2q37.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TIGD1  -     2q37.1   [Description]    (hg19-Feb_2009)
GoldenPathTIGD1 - 2q37.1 [CytoView hg19]  TIGD1 - 2q37.1 [CytoView hg38]
ImmunoBaseENSG00000221944
Genome Data Viewer NCBITIGD1 [Mapview hg19]  
OMIM612972   
Gene and transcription
Genbank (Entrez)AK056329 BC035143 BC063500
RefSeq transcript (Entrez)NM_145702
Consensus coding sequences : CCDS (NCBI)TIGD1
Gene ExpressionTIGD1 [ NCBI-GEO ]   TIGD1 [ EBI - ARRAY_EXPRESS ]   TIGD1 [ SEEK ]   TIGD1 [ MEM ]
Gene Expression Viewer (FireBrowse)TIGD1 [ Firebrowse - Broad ]
GenevisibleExpression of TIGD1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)200765
GTEX Portal (Tissue expression)TIGD1
Human Protein AtlasENSG00000221944-TIGD1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96MW7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96MW7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96MW7
PhosPhoSitePlusQ96MW7
Domaine pattern : Prosite (Expaxy)HTH_CENPB (PS51253)    HTH_PSQ (PS50960)   
Domains : Interpro (EBI)DDE_SF_endonuclease_dom    Homeobox-like_sf    HTH_CenpB_DNA-bd_dom    HTH_Psq   
Domain families : Pfam (Sanger)CENP-B_N (PF04218)    DDE_1 (PF03184)    HTH_Tnp_Tc5 (PF03221)   
Domain families : Pfam (NCBI)pfam04218    pfam03184    pfam03221   
Domain families : Smart (EMBL)CENPB (SM00674)  
Conserved Domain (NCBI)TIGD1
SuperfamilyQ96MW7
AlphaFold pdb e-kbQ96MW7   
Human Protein Atlas [tissue]ENSG00000221944-TIGD1 [tissue]
HPRD18185
Protein Interaction databases
DIP (DOE-UCLA)Q96MW7
IntAct (EBI)Q96MW7
BioGRIDTIGD1
STRING (EMBL)TIGD1
ZODIACTIGD1
Ontologies - Pathways
QuickGOQ96MW7
Ontology : AmiGODNA binding  protein binding  nucleus  
Ontology : EGO-EBIDNA binding  protein binding  nucleus  
NDEx NetworkTIGD1
Atlas of Cancer Signalling NetworkTIGD1
Wikipedia pathwaysTIGD1
Orthology - Evolution
OrthoDB200765
GeneTree (enSembl)ENSG00000221944
Phylogenetic Trees/Animal Genes : TreeFamTIGD1
Homologs : HomoloGeneTIGD1
Homology/Alignments : Family Browser (UCSC)TIGD1
Gene fusions - Rearrangements
Fusion : QuiverTIGD1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTIGD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TIGD1
dbVarTIGD1
ClinVarTIGD1
MonarchTIGD1
1000_GenomesTIGD1 
Exome Variant ServerTIGD1
GNOMAD BrowserENSG00000221944
Varsome BrowserTIGD1
ACMGTIGD1 variants
VarityQ96MW7
Genomic Variants (DGV)TIGD1 [DGVbeta]
DECIPHERTIGD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTIGD1 
Mutations
ICGC Data PortalTIGD1 
TCGA Data PortalTIGD1 
Broad Tumor PortalTIGD1
OASIS PortalTIGD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTIGD1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTIGD1
Mutations and Diseases : HGMDTIGD1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTIGD1
DgiDB (Drug Gene Interaction Database)TIGD1
DoCM (Curated mutations)TIGD1
CIViC (Clinical Interpretations of Variants in Cancer)TIGD1
Cancer3DTIGD1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612972   
Orphanet
DisGeNETTIGD1
MedgenTIGD1
Genetic Testing Registry TIGD1
NextProtQ96MW7 [Medical]
GENETestsTIGD1
Target ValidationTIGD1
Huge Navigator TIGD1 [HugePedia]
ClinGenTIGD1
Clinical trials, drugs, therapy
MyCancerGenomeTIGD1
Protein Interactions : CTDTIGD1
Pharm GKB GenePA38382
PharosQ96MW7
Clinical trialTIGD1
Miscellaneous
canSAR (ICR)TIGD1
HarmonizomeTIGD1
DataMed IndexTIGD1
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTIGD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:25:31 CEST 2021

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