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TIGD1 (tigger transposable element derived 1)

Identity

Alias_symbol (synonym)EEYORE
Other alias
HGNC (Hugo) TIGD1
LocusID (NCBI) 200765
Atlas_Id 74697
Location 2q37.1  [Link to chromosome band 2q37]
Location_base_pair Starts at 232547970 and ends at 232550590 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TIGD1   14523
Cards
Entrez_Gene (NCBI)TIGD1  200765  tigger transposable element derived 1
AliasesEEYORE
GeneCards (Weizmann)TIGD1
Ensembl hg19 (Hinxton)ENSG00000221944 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000221944 [Gene_View]  chr2:232547970-232550590 [Contig_View]  TIGD1 [Vega]
ICGC DataPortalENSG00000221944
TCGA cBioPortalTIGD1
AceView (NCBI)TIGD1
Genatlas (Paris)TIGD1
WikiGenes200765
SOURCE (Princeton)TIGD1
Genetics Home Reference (NIH)TIGD1
Genomic and cartography
GoldenPath hg38 (UCSC)TIGD1  -     chr2:232547970-232550590 -  2q37.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TIGD1  -     2q37.1   [Description]    (hg19-Feb_2009)
EnsemblTIGD1 - 2q37.1 [CytoView hg19]  TIGD1 - 2q37.1 [CytoView hg38]
Mapping of homologs : NCBITIGD1 [Mapview hg19]  TIGD1 [Mapview hg38]
OMIM612972   
Gene and transcription
Genbank (Entrez)AK056329 BC035143 BC063500
RefSeq transcript (Entrez)NM_145702
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TIGD1
Cluster EST : UnigeneHs.211823 [ NCBI ]
CGAP (NCI)Hs.211823
Alternative Splicing GalleryENSG00000221944
Gene ExpressionTIGD1 [ NCBI-GEO ]   TIGD1 [ EBI - ARRAY_EXPRESS ]   TIGD1 [ SEEK ]   TIGD1 [ MEM ]
Gene Expression Viewer (FireBrowse)TIGD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)200765
GTEX Portal (Tissue expression)TIGD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96MW7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96MW7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96MW7
Splice isoforms : SwissVarQ96MW7
PhosPhoSitePlusQ96MW7
Domaine pattern : Prosite (Expaxy)HTH_CENPB (PS51253)    HTH_PSQ (PS50960)   
Domains : Interpro (EBI)DDE_SF_endonuclease_dom    Homeobox-like    HTH_CenpB_DNA-bd_dom    HTH_Psq   
Domain families : Pfam (Sanger)CENP-B_N (PF04218)    DDE_1 (PF03184)    HTH_Tnp_Tc5 (PF03221)   
Domain families : Pfam (NCBI)pfam04218    pfam03184    pfam03221   
Domain families : Smart (EMBL)CENPB (SM00674)  
Conserved Domain (NCBI)TIGD1
DMDM Disease mutations200765
Blocks (Seattle)TIGD1
SuperfamilyQ96MW7
Human Protein AtlasENSG00000221944
Peptide AtlasQ96MW7
HPRD18185
IPIIPI00043467   IPI00385003   
Protein Interaction databases
DIP (DOE-UCLA)Q96MW7
IntAct (EBI)Q96MW7
FunCoupENSG00000221944
BioGRIDTIGD1
STRING (EMBL)TIGD1
ZODIACTIGD1
Ontologies - Pathways
QuickGOQ96MW7
Ontology : AmiGODNA binding  nucleus  
Ontology : EGO-EBIDNA binding  nucleus  
NDEx NetworkTIGD1
Atlas of Cancer Signalling NetworkTIGD1
Wikipedia pathwaysTIGD1
Orthology - Evolution
OrthoDB200765
GeneTree (enSembl)ENSG00000221944
Phylogenetic Trees/Animal Genes : TreeFamTIGD1
HOVERGENQ96MW7
HOGENOMQ96MW7
Homologs : HomoloGeneTIGD1
Homology/Alignments : Family Browser (UCSC)TIGD1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTIGD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TIGD1
dbVarTIGD1
ClinVarTIGD1
1000_GenomesTIGD1 
Exome Variant ServerTIGD1
ExAC (Exome Aggregation Consortium)TIGD1 (select the gene name)
Genetic variants : HAPMAP200765
Genomic Variants (DGV)TIGD1 [DGVbeta]
DECIPHERTIGD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTIGD1 
Mutations
ICGC Data PortalTIGD1 
TCGA Data PortalTIGD1 
Broad Tumor PortalTIGD1
OASIS PortalTIGD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTIGD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTIGD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TIGD1
DgiDB (Drug Gene Interaction Database)TIGD1
DoCM (Curated mutations)TIGD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TIGD1 (select a term)
intoGenTIGD1
Cancer3DTIGD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612972   
Orphanet
MedgenTIGD1
Genetic Testing Registry TIGD1
NextProtQ96MW7 [Medical]
TSGene200765
GENETestsTIGD1
Target ValidationTIGD1
Huge Navigator TIGD1 [HugePedia]
snp3D : Map Gene to Disease200765
BioCentury BCIQTIGD1
ClinGenTIGD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD200765
Chemical/Pharm GKB GenePA38382
Clinical trialTIGD1
Miscellaneous
canSAR (ICR)TIGD1 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTIGD1
EVEXTIGD1
GoPubMedTIGD1
iHOPTIGD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:45:32 CEST 2017

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