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TIGD2 (tigger transposable element derived 2)

Identity

Other aliasHEL106
HGNC (Hugo) TIGD2
LocusID (NCBI) 166815
Atlas_Id 74698
Location 4q22.1  [Link to chromosome band 4q22]
Location_base_pair Starts at 89112817 and ends at 89114901 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TIGD2   18333
Cards
Entrez_Gene (NCBI)TIGD2  166815  tigger transposable element derived 2
AliasesHEL106
GeneCards (Weizmann)TIGD2
Ensembl hg19 (Hinxton)ENSG00000180346 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000180346 [Gene_View]  chr4:89112817-89114901 [Contig_View]  TIGD2 [Vega]
ICGC DataPortalENSG00000180346
TCGA cBioPortalTIGD2
AceView (NCBI)TIGD2
Genatlas (Paris)TIGD2
WikiGenes166815
SOURCE (Princeton)TIGD2
Genetics Home Reference (NIH)TIGD2
Genomic and cartography
GoldenPath hg38 (UCSC)TIGD2  -     chr4:89112817-89114901 +  4q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TIGD2  -     4q22.1   [Description]    (hg19-Feb_2009)
EnsemblTIGD2 - 4q22.1 [CytoView hg19]  TIGD2 - 4q22.1 [CytoView hg38]
Mapping of homologs : NCBITIGD2 [Mapview hg19]  TIGD2 [Mapview hg38]
OMIM612973   
Gene and transcription
Genbank (Entrez)AK027653 AL833679 BP334478 BU742379 CB130942
RefSeq transcript (Entrez)NM_145715
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TIGD2
Cluster EST : UnigeneHs.58924 [ NCBI ]
CGAP (NCI)Hs.58924
Alternative Splicing GalleryENSG00000180346
Gene ExpressionTIGD2 [ NCBI-GEO ]   TIGD2 [ EBI - ARRAY_EXPRESS ]   TIGD2 [ SEEK ]   TIGD2 [ MEM ]
Gene Expression Viewer (FireBrowse)TIGD2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)166815
GTEX Portal (Tissue expression)TIGD2
Human Protein AtlasENSG00000180346-TIGD2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ4W5G0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ4W5G0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ4W5G0
Splice isoforms : SwissVarQ4W5G0
PhosPhoSitePlusQ4W5G0
Domaine pattern : Prosite (Expaxy)HTH_CENPB (PS51253)    HTH_PSQ (PS50960)   
Domains : Interpro (EBI)DDE_SF_endonuclease_dom    Homeobox-like    HTH_CenpB_DNA-bd_dom    HTH_Psq   
Domain families : Pfam (Sanger)CENP-B_N (PF04218)    DDE_1 (PF03184)    HTH_Tnp_Tc5 (PF03221)   
Domain families : Pfam (NCBI)pfam04218    pfam03184    pfam03221   
Domain families : Smart (EMBL)CENPB (SM00674)  
Conserved Domain (NCBI)TIGD2
DMDM Disease mutations166815
Blocks (Seattle)TIGD2
SuperfamilyQ4W5G0
Human Protein Atlas [tissue]ENSG00000180346-TIGD2 [tissue]
Peptide AtlasQ4W5G0
HPRD18186
IPIIPI00170549   
Protein Interaction databases
DIP (DOE-UCLA)Q4W5G0
IntAct (EBI)Q4W5G0
FunCoupENSG00000180346
BioGRIDTIGD2
STRING (EMBL)TIGD2
ZODIACTIGD2
Ontologies - Pathways
QuickGOQ4W5G0
Ontology : AmiGODNA binding  nucleus  
Ontology : EGO-EBIDNA binding  nucleus  
NDEx NetworkTIGD2
Atlas of Cancer Signalling NetworkTIGD2
Wikipedia pathwaysTIGD2
Orthology - Evolution
OrthoDB166815
GeneTree (enSembl)ENSG00000180346
Phylogenetic Trees/Animal Genes : TreeFamTIGD2
HOVERGENQ4W5G0
HOGENOMQ4W5G0
Homologs : HomoloGeneTIGD2
Čomol/gy-Alignments : Family Browser (UCSC)TIGD2
Gene fusions - Rearrangements
Tumor Fusion PortalTIGD2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTIGD2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TIGD2
dbVarTIGD2
ClinVarTIGD2
1000_GenomesTIGD2 
Exome Variant ServerTIGD2
ExAC (Exome Aggregation Consortium)ENSG00000180346
GNOMAD BrowserENSG00000180346
Genetic variants : HAPMAP166815
Genomic Variants (DGV)TIGD2 [DGVbeta]
DECIPHERTIGD2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTIGD2 
Mutations
ICGC Data PortalTIGD2 
TCGA Data PortalTIGD2 
Broad Tumor PortalTIGD2
OASIS PortalTIGD2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTIGD2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTIGD2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TIGD2
DgiDB (Drug Gene Interaction Database)TIGD2
DoCM (Curated mutations)TIGD2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TIGD2 (select a term)
intoGenTIGD2
Cancer3DTIGD2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612973   
Orphanet
DisGeNETTIGD2
MedgenTIGD2
Genetic Testing Registry TIGD2
NextProtQ4W5G0 [Medical]
TSGene166815
GENETestsTIGD2
Target ValidationTIGD2
Huge Navigator TIGD2 [HugePedia]
snp3D : Map Gene to Disease166815
BioCentury BCIQTIGD2
ClinGenTIGD2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD166815
Chemical/Pharm GKB GenePA38526
Clinical trialTIGD2
Miscellaneous
canSAR (ICR)TIGD2 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTIGD2
EVEXTIGD2
GoPubMedTIGD2
iHOPTIGD2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:11:03 CET 2017

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