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TIGD2 (tigger transposable element derived 2)

Identity

Alias (NCBI)HEL106
HGNC (Hugo) TIGD2
LocusID (NCBI) 166815
Atlas_Id 74698
Location 4q22.1  [Link to chromosome band 4q22]
Location_base_pair Starts at 89112817 and ends at 89114901 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TIGD2   18333
Cards
Entrez_Gene (NCBI)TIGD2    tigger transposable element derived 2
AliasesHEL106
GeneCards (Weizmann)TIGD2
Ensembl hg19 (Hinxton)ENSG00000180346 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000180346 [Gene_View]  ENSG00000180346 [Sequence]  chr4:89112817-89114901 [Contig_View]  TIGD2 [Vega]
ICGC DataPortalENSG00000180346
TCGA cBioPortalTIGD2
AceView (NCBI)TIGD2
Genatlas (Paris)TIGD2
SOURCE (Princeton)TIGD2
Genetics Home Reference (NIH)TIGD2
Genomic and cartography
GoldenPath hg38 (UCSC)TIGD2  -     chr4:89112817-89114901 +  4q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TIGD2  -     4q22.1   [Description]    (hg19-Feb_2009)
GoldenPathTIGD2 - 4q22.1 [CytoView hg19]  TIGD2 - 4q22.1 [CytoView hg38]
ImmunoBaseENSG00000180346
Genome Data Viewer NCBITIGD2 [Mapview hg19]  
OMIM612973   
Gene and transcription
Genbank (Entrez)AK027653 AL833679 BP334478 BU742379 CB130942
RefSeq transcript (Entrez)NM_001382380 NM_145715
Consensus coding sequences : CCDS (NCBI)TIGD2
Gene ExpressionTIGD2 [ NCBI-GEO ]   TIGD2 [ EBI - ARRAY_EXPRESS ]   TIGD2 [ SEEK ]   TIGD2 [ MEM ]
Gene Expression Viewer (FireBrowse)TIGD2 [ Firebrowse - Broad ]
GenevisibleExpression of TIGD2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)166815
GTEX Portal (Tissue expression)TIGD2
Human Protein AtlasENSG00000180346-TIGD2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ4W5G0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ4W5G0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ4W5G0
PhosPhoSitePlusQ4W5G0
Domaine pattern : Prosite (Expaxy)HTH_CENPB (PS51253)    HTH_PSQ (PS50960)   
Domains : Interpro (EBI)DDE_SF_endonuclease_dom    Homeobox-like_sf    HTH_CenpB_DNA-bd_dom    HTH_Psq    WH-like_DNA-bd_sf   
Domain families : Pfam (Sanger)CENP-B_N (PF04218)    DDE_1 (PF03184)    HTH_Tnp_Tc5 (PF03221)   
Domain families : Pfam (NCBI)pfam04218    pfam03184    pfam03221   
Domain families : Smart (EMBL)CENPB (SM00674)  
Conserved Domain (NCBI)TIGD2
SuperfamilyQ4W5G0
AlphaFold pdb e-kbQ4W5G0   
Human Protein Atlas [tissue]ENSG00000180346-TIGD2 [tissue]
HPRD18186
Protein Interaction databases
DIP (DOE-UCLA)Q4W5G0
IntAct (EBI)Q4W5G0
BioGRIDTIGD2
STRING (EMBL)TIGD2
ZODIACTIGD2
Ontologies - Pathways
QuickGOQ4W5G0
Ontology : AmiGODNA binding  nucleus  
Ontology : EGO-EBIDNA binding  nucleus  
NDEx NetworkTIGD2
Atlas of Cancer Signalling NetworkTIGD2
Wikipedia pathwaysTIGD2
Orthology - Evolution
OrthoDB166815
GeneTree (enSembl)ENSG00000180346
Phylogenetic Trees/Animal Genes : TreeFamTIGD2
Homologs : HomoloGeneTIGD2
Homology/Alignments : Family Browser (UCSC)TIGD2
Gene fusions - Rearrangements
Fusion : QuiverTIGD2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTIGD2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TIGD2
dbVarTIGD2
ClinVarTIGD2
MonarchTIGD2
1000_GenomesTIGD2 
Exome Variant ServerTIGD2
GNOMAD BrowserENSG00000180346
Varsome BrowserTIGD2
ACMGTIGD2 variants
VarityQ4W5G0
Genomic Variants (DGV)TIGD2 [DGVbeta]
DECIPHERTIGD2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTIGD2 
Mutations
ICGC Data PortalTIGD2 
TCGA Data PortalTIGD2 
Broad Tumor PortalTIGD2
OASIS PortalTIGD2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTIGD2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTIGD2
Mutations and Diseases : HGMDTIGD2
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTIGD2
DgiDB (Drug Gene Interaction Database)TIGD2
DoCM (Curated mutations)TIGD2
CIViC (Clinical Interpretations of Variants in Cancer)TIGD2
Cancer3DTIGD2
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612973   
Orphanet
DisGeNETTIGD2
MedgenTIGD2
Genetic Testing Registry TIGD2
NextProtQ4W5G0 [Medical]
GENETestsTIGD2
Target ValidationTIGD2
Huge Navigator TIGD2 [HugePedia]
ClinGenTIGD2
Clinical trials, drugs, therapy
MyCancerGenomeTIGD2
Protein Interactions : CTDTIGD2
Pharm GKB GenePA38526
PharosQ4W5G0
Clinical trialTIGD2
Miscellaneous
canSAR (ICR)TIGD2
HarmonizomeTIGD2
DataMed IndexTIGD2
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTIGD2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:25:31 CEST 2021

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