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TIGD3 (tigger transposable element derived 3)

Identity

Other alias-
HGNC (Hugo) TIGD3
LocusID (NCBI) 220359
Atlas_Id 74699
Location 11q13.1  [Link to chromosome band 11q13]
Location_base_pair Starts at 65354811 and ends at 65357611 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TIGD3   18334
Cards
Entrez_Gene (NCBI)TIGD3  220359  tigger transposable element derived 3
Aliases
GeneCards (Weizmann)TIGD3
Ensembl hg19 (Hinxton)ENSG00000173825 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000173825 [Gene_View]  chr11:65354811-65357611 [Contig_View]  TIGD3 [Vega]
ICGC DataPortalENSG00000173825
TCGA cBioPortalTIGD3
AceView (NCBI)TIGD3
Genatlas (Paris)TIGD3
WikiGenes220359
SOURCE (Princeton)TIGD3
Genetics Home Reference (NIH)TIGD3
Genomic and cartography
GoldenPath hg38 (UCSC)TIGD3  -     chr11:65354811-65357611 +  11q13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TIGD3  -     11q13.1   [Description]    (hg19-Feb_2009)
EnsemblTIGD3 - 11q13.1 [CytoView hg19]  TIGD3 - 11q13.1 [CytoView hg38]
Mapping of homologs : NCBITIGD3 [Mapview hg19]  TIGD3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF001546 AL558462 BC074862 BU741546 DR002049
RefSeq transcript (Entrez)NM_145719
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TIGD3
Cluster EST : UnigeneHs.632121 [ NCBI ]
CGAP (NCI)Hs.632121
Alternative Splicing GalleryENSG00000173825
Gene ExpressionTIGD3 [ NCBI-GEO ]   TIGD3 [ EBI - ARRAY_EXPRESS ]   TIGD3 [ SEEK ]   TIGD3 [ MEM ]
Gene Expression Viewer (FireBrowse)TIGD3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)220359
GTEX Portal (Tissue expression)TIGD3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6B0B8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6B0B8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6B0B8
Splice isoforms : SwissVarQ6B0B8
PhosPhoSitePlusQ6B0B8
Domaine pattern : Prosite (Expaxy)HTH_CENPB (PS51253)    HTH_PSQ (PS50960)   
Domains : Interpro (EBI)DDE_SF_endonuclease_dom    Homeobox-like    HTH_CenpB_DNA-bd_dom    HTH_Psq   
Domain families : Pfam (Sanger)CENP-B_N (PF04218)    DDE_1 (PF03184)    HTH_Tnp_Tc5 (PF03221)   
Domain families : Pfam (NCBI)pfam04218    pfam03184    pfam03221   
Domain families : Smart (EMBL)CENPB (SM00674)  
Conserved Domain (NCBI)TIGD3
DMDM Disease mutations220359
Blocks (Seattle)TIGD3
SuperfamilyQ6B0B8
Human Protein AtlasENSG00000173825
Peptide AtlasQ6B0B8
HPRD18187
IPIIPI00170550   
Protein Interaction databases
DIP (DOE-UCLA)Q6B0B8
IntAct (EBI)Q6B0B8
FunCoupENSG00000173825
BioGRIDTIGD3
STRING (EMBL)TIGD3
ZODIACTIGD3
Ontologies - Pathways
QuickGOQ6B0B8
Ontology : AmiGODNA binding  nucleus  
Ontology : EGO-EBIDNA binding  nucleus  
NDEx NetworkTIGD3
Atlas of Cancer Signalling NetworkTIGD3
Wikipedia pathwaysTIGD3
Orthology - Evolution
OrthoDB220359
GeneTree (enSembl)ENSG00000173825
Phylogenetic Trees/Animal Genes : TreeFamTIGD3
HOVERGENQ6B0B8
HOGENOMQ6B0B8
Homologs : HomoloGeneTIGD3
Homology/Alignments : Family Browser (UCSC)TIGD3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTIGD3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TIGD3
dbVarTIGD3
ClinVarTIGD3
1000_GenomesTIGD3 
Exome Variant ServerTIGD3
ExAC (Exome Aggregation Consortium)TIGD3 (select the gene name)
Genetic variants : HAPMAP220359
Genomic Variants (DGV)TIGD3 [DGVbeta]
DECIPHERTIGD3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTIGD3 
Mutations
ICGC Data PortalTIGD3 
TCGA Data PortalTIGD3 
Broad Tumor PortalTIGD3
OASIS PortalTIGD3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTIGD3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTIGD3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TIGD3
DgiDB (Drug Gene Interaction Database)TIGD3
DoCM (Curated mutations)TIGD3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TIGD3 (select a term)
intoGenTIGD3
Cancer3DTIGD3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTIGD3
Genetic Testing Registry TIGD3
NextProtQ6B0B8 [Medical]
TSGene220359
GENETestsTIGD3
Target ValidationTIGD3
Huge Navigator TIGD3 [HugePedia]
snp3D : Map Gene to Disease220359
BioCentury BCIQTIGD3
ClinGenTIGD3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD220359
Chemical/Pharm GKB GenePA38527
Clinical trialTIGD3
Miscellaneous
canSAR (ICR)TIGD3 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTIGD3
EVEXTIGD3
GoPubMedTIGD3
iHOPTIGD3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:41:27 CEST 2017

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