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TIGD3 (tigger transposable element derived 3)

Identity

Alias (NCBI)-
HGNC (Hugo) TIGD3
LocusID (NCBI) 220359
Atlas_Id 74699
Location 11q13.1  [Link to chromosome band 11q13]
Location_base_pair Starts at 65354751 and ends at 65357611 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TIGD3   18334
Cards
Entrez_Gene (NCBI)TIGD3    tigger transposable element derived 3
Aliases
GeneCards (Weizmann)TIGD3
Ensembl hg19 (Hinxton)ENSG00000173825 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000173825 [Gene_View]  ENSG00000173825 [Sequence]  chr11:65354751-65357611 [Contig_View]  TIGD3 [Vega]
ICGC DataPortalENSG00000173825
TCGA cBioPortalTIGD3
AceView (NCBI)TIGD3
Genatlas (Paris)TIGD3
SOURCE (Princeton)TIGD3
Genetics Home Reference (NIH)TIGD3
Genomic and cartography
GoldenPath hg38 (UCSC)TIGD3  -     chr11:65354751-65357611 +  11q13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TIGD3  -     11q13.1   [Description]    (hg19-Feb_2009)
GoldenPathTIGD3 - 11q13.1 [CytoView hg19]  TIGD3 - 11q13.1 [CytoView hg38]
ImmunoBaseENSG00000173825
Genome Data Viewer NCBITIGD3 [Mapview hg19]  
OMIM619084   
Gene and transcription
Genbank (Entrez)AF001546 AL558462 BC074862 BU741546 DR002049
RefSeq transcript (Entrez)NM_145719
Consensus coding sequences : CCDS (NCBI)TIGD3
Gene ExpressionTIGD3 [ NCBI-GEO ]   TIGD3 [ EBI - ARRAY_EXPRESS ]   TIGD3 [ SEEK ]   TIGD3 [ MEM ]
Gene Expression Viewer (FireBrowse)TIGD3 [ Firebrowse - Broad ]
GenevisibleExpression of TIGD3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)220359
GTEX Portal (Tissue expression)TIGD3
Human Protein AtlasENSG00000173825-TIGD3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6B0B8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6B0B8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6B0B8
PhosPhoSitePlusQ6B0B8
Domaine pattern : Prosite (Expaxy)HTH_CENPB (PS51253)    HTH_PSQ (PS50960)   
Domains : Interpro (EBI)DDE_SF_endonuclease_dom    Homeobox-like_sf    HTH_CenpB_DNA-bd_dom    HTH_Psq   
Domain families : Pfam (Sanger)CENP-B_N (PF04218)    DDE_1 (PF03184)    HTH_Tnp_Tc5 (PF03221)   
Domain families : Pfam (NCBI)pfam04218    pfam03184    pfam03221   
Domain families : Smart (EMBL)CENPB (SM00674)  
Conserved Domain (NCBI)TIGD3
SuperfamilyQ6B0B8
AlphaFold pdb e-kbQ6B0B8   
Human Protein Atlas [tissue]ENSG00000173825-TIGD3 [tissue]
HPRD18187
Protein Interaction databases
DIP (DOE-UCLA)Q6B0B8
IntAct (EBI)Q6B0B8
BioGRIDTIGD3
STRING (EMBL)TIGD3
ZODIACTIGD3
Ontologies - Pathways
QuickGOQ6B0B8
Ontology : AmiGODNA binding  protein binding  nucleus  
Ontology : EGO-EBIDNA binding  protein binding  nucleus  
NDEx NetworkTIGD3
Atlas of Cancer Signalling NetworkTIGD3
Wikipedia pathwaysTIGD3
Orthology - Evolution
OrthoDB220359
GeneTree (enSembl)ENSG00000173825
Phylogenetic Trees/Animal Genes : TreeFamTIGD3
Homologs : HomoloGeneTIGD3
Homology/Alignments : Family Browser (UCSC)TIGD3
Gene fusions - Rearrangements
Fusion : QuiverTIGD3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTIGD3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TIGD3
dbVarTIGD3
ClinVarTIGD3
MonarchTIGD3
1000_GenomesTIGD3 
Exome Variant ServerTIGD3
GNOMAD BrowserENSG00000173825
Varsome BrowserTIGD3
ACMGTIGD3 variants
VarityQ6B0B8
Genomic Variants (DGV)TIGD3 [DGVbeta]
DECIPHERTIGD3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTIGD3 
Mutations
ICGC Data PortalTIGD3 
TCGA Data PortalTIGD3 
Broad Tumor PortalTIGD3
OASIS PortalTIGD3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTIGD3  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTIGD3
Mutations and Diseases : HGMDTIGD3
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTIGD3
DgiDB (Drug Gene Interaction Database)TIGD3
DoCM (Curated mutations)TIGD3
CIViC (Clinical Interpretations of Variants in Cancer)TIGD3
Cancer3DTIGD3
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM619084   
Orphanet
DisGeNETTIGD3
MedgenTIGD3
Genetic Testing Registry TIGD3
NextProtQ6B0B8 [Medical]
GENETestsTIGD3
Target ValidationTIGD3
Huge Navigator TIGD3 [HugePedia]
ClinGenTIGD3
Clinical trials, drugs, therapy
MyCancerGenomeTIGD3
Protein Interactions : CTDTIGD3
Pharm GKB GenePA38527
PharosQ6B0B8
Clinical trialTIGD3
Miscellaneous
canSAR (ICR)TIGD3
HarmonizomeTIGD3
DataMed IndexTIGD3
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTIGD3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 16:25:32 CEST 2021

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