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TIGD4 (tigger transposable element derived 4)

Identity

Alias (NCBI)-
HGNC (Hugo) TIGD4
LocusID (NCBI) 201798
Atlas_Id 74700
Location 4q31.3  [Link to chromosome band 4q31]
Location_base_pair Starts at 152769354 and ends at 152779730 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TIGD4   18335
Cards
Entrez_Gene (NCBI)TIGD4    tigger transposable element derived 4
Aliases
GeneCards (Weizmann)TIGD4
Ensembl hg19 (Hinxton)ENSG00000169989 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000169989 [Gene_View]  ENSG00000169989 [Sequence]  chr4:152769354-152779730 [Contig_View]  TIGD4 [Vega]
ICGC DataPortalENSG00000169989
TCGA cBioPortalTIGD4
AceView (NCBI)TIGD4
Genatlas (Paris)TIGD4
SOURCE (Princeton)TIGD4
Genetics Home Reference (NIH)TIGD4
Genomic and cartography
GoldenPath hg38 (UCSC)TIGD4  -     chr4:152769354-152779730 -  4q31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TIGD4  -     4q31.3   [Description]    (hg19-Feb_2009)
GoldenPathTIGD4 - 4q31.3 [CytoView hg19]  TIGD4 - 4q31.3 [CytoView hg38]
ImmunoBaseENSG00000169989
Genome Data Viewer NCBITIGD4 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK058054 BC037869
RefSeq transcript (Entrez)NM_145720
Consensus coding sequences : CCDS (NCBI)TIGD4
Gene ExpressionTIGD4 [ NCBI-GEO ]   TIGD4 [ EBI - ARRAY_EXPRESS ]   TIGD4 [ SEEK ]   TIGD4 [ MEM ]
Gene Expression Viewer (FireBrowse)TIGD4 [ Firebrowse - Broad ]
GenevisibleExpression of TIGD4 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)201798
GTEX Portal (Tissue expression)TIGD4
Human Protein AtlasENSG00000169989-TIGD4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IY51   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IY51  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IY51
PhosPhoSitePlusQ8IY51
Domaine pattern : Prosite (Expaxy)HTH_CENPB (PS51253)    HTH_PSQ (PS50960)   
Domains : Interpro (EBI)DDE_SF_endonuclease_dom    Homeobox-like_sf    HTH_CenpB_DNA-bd_dom    HTH_Psq   
Domain families : Pfam (Sanger)CENP-B_N (PF04218)    DDE_1 (PF03184)    HTH_Tnp_Tc5 (PF03221)   
Domain families : Pfam (NCBI)pfam04218    pfam03184    pfam03221   
Domain families : Smart (EMBL)CENPB (SM00674)  
Conserved Domain (NCBI)TIGD4
SuperfamilyQ8IY51
AlphaFold pdb e-kbQ8IY51   
Human Protein Atlas [tissue]ENSG00000169989-TIGD4 [tissue]
HPRD18188
Protein Interaction databases
DIP (DOE-UCLA)Q8IY51
IntAct (EBI)Q8IY51
BioGRIDTIGD4
STRING (EMBL)TIGD4
ZODIACTIGD4
Ontologies - Pathways
QuickGOQ8IY51
Ontology : AmiGODNA binding  protein binding  nucleus  
Ontology : EGO-EBIDNA binding  protein binding  nucleus  
NDEx NetworkTIGD4
Atlas of Cancer Signalling NetworkTIGD4
Wikipedia pathwaysTIGD4
Orthology - Evolution
OrthoDB201798
GeneTree (enSembl)ENSG00000169989
Phylogenetic Trees/Animal Genes : TreeFamTIGD4
Homologs : HomoloGeneTIGD4
Homology/Alignments : Family Browser (UCSC)TIGD4
Gene fusions - Rearrangements
Fusion : QuiverTIGD4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTIGD4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TIGD4
dbVarTIGD4
ClinVarTIGD4
MonarchTIGD4
1000_GenomesTIGD4 
Exome Variant ServerTIGD4
GNOMAD BrowserENSG00000169989
Varsome BrowserTIGD4
ACMGTIGD4 variants
VarityQ8IY51
Genomic Variants (DGV)TIGD4 [DGVbeta]
DECIPHERTIGD4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTIGD4 
Mutations
ICGC Data PortalTIGD4 
TCGA Data PortalTIGD4 
Broad Tumor PortalTIGD4
OASIS PortalTIGD4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTIGD4  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTIGD4
Mutations and Diseases : HGMDTIGD4
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTIGD4
DgiDB (Drug Gene Interaction Database)TIGD4
DoCM (Curated mutations)TIGD4
CIViC (Clinical Interpretations of Variants in Cancer)TIGD4
Cancer3DTIGD4
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTIGD4
MedgenTIGD4
Genetic Testing Registry TIGD4
NextProtQ8IY51 [Medical]
GENETestsTIGD4
Target ValidationTIGD4
Huge Navigator TIGD4 [HugePedia]
ClinGenTIGD4
Clinical trials, drugs, therapy
MyCancerGenomeTIGD4
Protein Interactions : CTDTIGD4
Pharm GKB GenePA38528
PharosQ8IY51
Clinical trialTIGD4
Miscellaneous
canSAR (ICR)TIGD4
HarmonizomeTIGD4
DataMed IndexTIGD4
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTIGD4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 16:25:32 CEST 2021

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