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TIGD4 (tigger transposable element derived 4)

Identity

Other alias-
HGNC (Hugo) TIGD4
LocusID (NCBI) 201798
Atlas_Id 74700
Location 4q31.3  [Link to chromosome band 4q31]
Location_base_pair Starts at 152769354 and ends at 152779764 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TIGD4   18335
Cards
Entrez_Gene (NCBI)TIGD4  201798  tigger transposable element derived 4
Aliases
GeneCards (Weizmann)TIGD4
Ensembl hg19 (Hinxton)ENSG00000169989 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000169989 [Gene_View]  chr4:152769354-152779764 [Contig_View]  TIGD4 [Vega]
ICGC DataPortalENSG00000169989
TCGA cBioPortalTIGD4
AceView (NCBI)TIGD4
Genatlas (Paris)TIGD4
WikiGenes201798
SOURCE (Princeton)TIGD4
Genetics Home Reference (NIH)TIGD4
Genomic and cartography
GoldenPath hg38 (UCSC)TIGD4  -     chr4:152769354-152779764 -  4q31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TIGD4  -     4q31.3   [Description]    (hg19-Feb_2009)
EnsemblTIGD4 - 4q31.3 [CytoView hg19]  TIGD4 - 4q31.3 [CytoView hg38]
Mapping of homologs : NCBITIGD4 [Mapview hg19]  TIGD4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK058054 BC037869 HQ448036
RefSeq transcript (Entrez)NM_145720
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TIGD4
Cluster EST : UnigeneHs.301243 [ NCBI ]
CGAP (NCI)Hs.301243
Alternative Splicing GalleryENSG00000169989
Gene ExpressionTIGD4 [ NCBI-GEO ]   TIGD4 [ EBI - ARRAY_EXPRESS ]   TIGD4 [ SEEK ]   TIGD4 [ MEM ]
Gene Expression Viewer (FireBrowse)TIGD4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)201798
GTEX Portal (Tissue expression)TIGD4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IY51   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IY51  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IY51
Splice isoforms : SwissVarQ8IY51
PhosPhoSitePlusQ8IY51
Domaine pattern : Prosite (Expaxy)HTH_CENPB (PS51253)    HTH_PSQ (PS50960)   
Domains : Interpro (EBI)DDE_SF_endonuclease_dom    Homeobox-like    HTH_CenpB_DNA-bd_dom    HTH_Psq   
Domain families : Pfam (Sanger)CENP-B_N (PF04218)    DDE_1 (PF03184)    HTH_Tnp_Tc5 (PF03221)   
Domain families : Pfam (NCBI)pfam04218    pfam03184    pfam03221   
Domain families : Smart (EMBL)CENPB (SM00674)  
Conserved Domain (NCBI)TIGD4
DMDM Disease mutations201798
Blocks (Seattle)TIGD4
SuperfamilyQ8IY51
Human Protein AtlasENSG00000169989
Peptide AtlasQ8IY51
HPRD18188
IPIIPI00293368   
Protein Interaction databases
DIP (DOE-UCLA)Q8IY51
IntAct (EBI)Q8IY51
FunCoupENSG00000169989
BioGRIDTIGD4
STRING (EMBL)TIGD4
ZODIACTIGD4
Ontologies - Pathways
QuickGOQ8IY51
Ontology : AmiGODNA binding  nucleus  
Ontology : EGO-EBIDNA binding  nucleus  
NDEx NetworkTIGD4
Atlas of Cancer Signalling NetworkTIGD4
Wikipedia pathwaysTIGD4
Orthology - Evolution
OrthoDB201798
GeneTree (enSembl)ENSG00000169989
Phylogenetic Trees/Animal Genes : TreeFamTIGD4
HOVERGENQ8IY51
HOGENOMQ8IY51
Homologs : HomoloGeneTIGD4
Homology/Alignments : Family Browser (UCSC)TIGD4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTIGD4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TIGD4
dbVarTIGD4
ClinVarTIGD4
1000_GenomesTIGD4 
Exome Variant ServerTIGD4
ExAC (Exome Aggregation Consortium)TIGD4 (select the gene name)
Genetic variants : HAPMAP201798
Genomic Variants (DGV)TIGD4 [DGVbeta]
DECIPHERTIGD4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTIGD4 
Mutations
ICGC Data PortalTIGD4 
TCGA Data PortalTIGD4 
Broad Tumor PortalTIGD4
OASIS PortalTIGD4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTIGD4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTIGD4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TIGD4
DgiDB (Drug Gene Interaction Database)TIGD4
DoCM (Curated mutations)TIGD4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TIGD4 (select a term)
intoGenTIGD4
Cancer3DTIGD4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTIGD4
Genetic Testing Registry TIGD4
NextProtQ8IY51 [Medical]
TSGene201798
GENETestsTIGD4
Target ValidationTIGD4
Huge Navigator TIGD4 [HugePedia]
snp3D : Map Gene to Disease201798
BioCentury BCIQTIGD4
ClinGenTIGD4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD201798
Chemical/Pharm GKB GenePA38528
Clinical trialTIGD4
Miscellaneous
canSAR (ICR)TIGD4 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTIGD4
EVEXTIGD4
GoPubMedTIGD4
iHOPTIGD4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:45:32 CEST 2017

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