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TIGD5 (tigger transposable element derived 5)

Identity

Alias_symbol (synonym)FLJ14926
Other alias-
HGNC (Hugo) TIGD5
LocusID (NCBI) 84948
Atlas_Id 74701
Location 8q24.3  [Link to chromosome band 8q24]
Location_base_pair Starts at 143597904 and ends at 143600315 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TIGD5   18336
Cards
Entrez_Gene (NCBI)TIGD5  84948  tigger transposable element derived 5
Aliases
GeneCards (Weizmann)TIGD5
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr8:143597904-143600315 [Contig_View]  TIGD5 [Vega]
TCGA cBioPortalTIGD5
AceView (NCBI)TIGD5
Genatlas (Paris)TIGD5
WikiGenes84948
SOURCE (Princeton)TIGD5
Genetics Home Reference (NIH)TIGD5
Genomic and cartography
GoldenPath hg38 (UCSC)TIGD5  -     chr8:143597904-143600315 +  8q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TIGD5  -     8q24.3   [Description]    (hg19-Feb_2009)
EnsemblTIGD5 - 8q24.3 [CytoView hg19]  TIGD5 - 8q24.3 [CytoView hg38]
Mapping of homologs : NCBITIGD5 [Mapview hg19]  TIGD5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK027832 AK223583 BC032632 BC069229
RefSeq transcript (Entrez)NM_032862
RefSeq genomic (Entrez)NC_000008 NC_018919 NT_187571
Consensus coding sequences : CCDS (NCBI)TIGD5
Cluster EST : UnigeneHs.71574 [ NCBI ]
CGAP (NCI)Hs.71574
Gene ExpressionTIGD5 [ NCBI-GEO ]   TIGD5 [ EBI - ARRAY_EXPRESS ]   TIGD5 [ SEEK ]   TIGD5 [ MEM ]
Gene Expression Viewer (FireBrowse)TIGD5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84948
GTEX Portal (Tissue expression)TIGD5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ53EQ6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ53EQ6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ53EQ6
Splice isoforms : SwissVarQ53EQ6
PhosPhoSitePlusQ53EQ6
Domaine pattern : Prosite (Expaxy)HTH_CENPB (PS51253)    HTH_PSQ (PS50960)   
Domains : Interpro (EBI)DDE_SF_endonuclease_dom    Homeobox-like    HTH_CenpB_DNA-bd_dom    HTH_Psq   
Domain families : Pfam (Sanger)CENP-B_N (PF04218)    DDE_1 (PF03184)    HTH_Tnp_Tc5 (PF03221)   
Domain families : Pfam (NCBI)pfam04218    pfam03184    pfam03221   
Domain families : Smart (EMBL)CENPB (SM00674)  
Conserved Domain (NCBI)TIGD5
DMDM Disease mutations84948
Blocks (Seattle)TIGD5
SuperfamilyQ53EQ6
Peptide AtlasQ53EQ6
HPRD18189
IPIIPI00170751   IPI00964971   
Protein Interaction databases
DIP (DOE-UCLA)Q53EQ6
IntAct (EBI)Q53EQ6
BioGRIDTIGD5
STRING (EMBL)TIGD5
ZODIACTIGD5
Ontologies - Pathways
QuickGOQ53EQ6
Ontology : AmiGOmolecular_function  DNA binding  cellular_component  nucleus  biological_process  
Ontology : EGO-EBImolecular_function  DNA binding  cellular_component  nucleus  biological_process  
NDEx NetworkTIGD5
Atlas of Cancer Signalling NetworkTIGD5
Wikipedia pathwaysTIGD5
Orthology - Evolution
OrthoDB84948
Phylogenetic Trees/Animal Genes : TreeFamTIGD5
HOVERGENQ53EQ6
HOGENOMQ53EQ6
Homologs : HomoloGeneTIGD5
Homology/Alignments : Family Browser (UCSC)TIGD5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTIGD5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TIGD5
dbVarTIGD5
ClinVarTIGD5
1000_GenomesTIGD5 
Exome Variant ServerTIGD5
ExAC (Exome Aggregation Consortium)TIGD5 (select the gene name)
Genetic variants : HAPMAP84948
Genomic Variants (DGV)TIGD5 [DGVbeta]
DECIPHERTIGD5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTIGD5 
Mutations
ICGC Data PortalTIGD5 
TCGA Data PortalTIGD5 
Broad Tumor PortalTIGD5
OASIS PortalTIGD5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTIGD5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTIGD5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TIGD5
DgiDB (Drug Gene Interaction Database)TIGD5
DoCM (Curated mutations)TIGD5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TIGD5 (select a term)
intoGenTIGD5
Cancer3DTIGD5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTIGD5
Genetic Testing Registry TIGD5
NextProtQ53EQ6 [Medical]
TSGene84948
GENETestsTIGD5
Target ValidationTIGD5
Huge Navigator TIGD5 [HugePedia]
snp3D : Map Gene to Disease84948
BioCentury BCIQTIGD5
ClinGenTIGD5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84948
Chemical/Pharm GKB GenePA38529
Clinical trialTIGD5
Miscellaneous
canSAR (ICR)TIGD5 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTIGD5
EVEXTIGD5
GoPubMedTIGD5
iHOPTIGD5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:41:27 CEST 2017

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