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TIGD6 (tigger transposable element derived 6)

Identity

Alias (NCBI)-
HGNC (Hugo) TIGD6
HGNC Alias symbDKFZp761E2110
LocusID (NCBI) 81789
Atlas_Id 74702
Location 5q32  [Link to chromosome band 5q32]
Location_base_pair Starts at 149993120 and ends at 150000654 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TIGD6   18332
Cards
Entrez_Gene (NCBI)TIGD6    tigger transposable element derived 6
Aliases
GeneCards (Weizmann)TIGD6
Ensembl hg19 (Hinxton)ENSG00000164296 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164296 [Gene_View]  ENSG00000164296 [Sequence]  chr5:149993120-150000654 [Contig_View]  TIGD6 [Vega]
ICGC DataPortalENSG00000164296
TCGA cBioPortalTIGD6
AceView (NCBI)TIGD6
Genatlas (Paris)TIGD6
SOURCE (Princeton)TIGD6
Genetics Home Reference (NIH)TIGD6
Genomic and cartography
GoldenPath hg38 (UCSC)TIGD6  -     chr5:149993120-150000654 -  5q32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TIGD6  -     5q32   [Description]    (hg19-Feb_2009)
GoldenPathTIGD6 - 5q32 [CytoView hg19]  TIGD6 - 5q32 [CytoView hg38]
ImmunoBaseENSG00000164296
Genome Data Viewer NCBITIGD6 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK056604 AK092978 AK096325 AL136539 BC033641
RefSeq transcript (Entrez)NM_001243253 NM_030953
Consensus coding sequences : CCDS (NCBI)TIGD6
Gene ExpressionTIGD6 [ NCBI-GEO ]   TIGD6 [ EBI - ARRAY_EXPRESS ]   TIGD6 [ SEEK ]   TIGD6 [ MEM ]
Gene Expression Viewer (FireBrowse)TIGD6 [ Firebrowse - Broad ]
GenevisibleExpression of TIGD6 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81789
GTEX Portal (Tissue expression)TIGD6
Human Protein AtlasENSG00000164296-TIGD6 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ17RP2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ17RP2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ17RP2
PhosPhoSitePlusQ17RP2
Domaine pattern : Prosite (Expaxy)HTH_CENPB (PS51253)    HTH_PSQ (PS50960)   
Domains : Interpro (EBI)DDE_SF_endonuclease_dom    Homeobox-like_sf    HTH_CenpB_DNA-bd_dom    HTH_Psq   
Domain families : Pfam (Sanger)CENP-B_N (PF04218)    DDE_1 (PF03184)    HTH_Tnp_Tc5 (PF03221)   
Domain families : Pfam (NCBI)pfam04218    pfam03184    pfam03221   
Domain families : Smart (EMBL)CENPB (SM00674)  
Conserved Domain (NCBI)TIGD6
SuperfamilyQ17RP2
AlphaFold pdb e-kbQ17RP2   
Human Protein Atlas [tissue]ENSG00000164296-TIGD6 [tissue]
HPRD18190
Protein Interaction databases
DIP (DOE-UCLA)Q17RP2
IntAct (EBI)Q17RP2
BioGRIDTIGD6
STRING (EMBL)TIGD6
ZODIACTIGD6
Ontologies - Pathways
QuickGOQ17RP2
Ontology : AmiGODNA binding  nucleus  nucleus  
Ontology : EGO-EBIDNA binding  nucleus  nucleus  
NDEx NetworkTIGD6
Atlas of Cancer Signalling NetworkTIGD6
Wikipedia pathwaysTIGD6
Orthology - Evolution
OrthoDB81789
GeneTree (enSembl)ENSG00000164296
Phylogenetic Trees/Animal Genes : TreeFamTIGD6
Homologs : HomoloGeneTIGD6
Homology/Alignments : Family Browser (UCSC)TIGD6
Gene fusions - Rearrangements
Fusion : QuiverTIGD6
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTIGD6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TIGD6
dbVarTIGD6
ClinVarTIGD6
MonarchTIGD6
1000_GenomesTIGD6 
Exome Variant ServerTIGD6
GNOMAD BrowserENSG00000164296
Varsome BrowserTIGD6
ACMGTIGD6 variants
VarityQ17RP2
Genomic Variants (DGV)TIGD6 [DGVbeta]
DECIPHERTIGD6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTIGD6 
Mutations
ICGC Data PortalTIGD6 
TCGA Data PortalTIGD6 
Broad Tumor PortalTIGD6
OASIS PortalTIGD6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTIGD6  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTIGD6
Mutations and Diseases : HGMDTIGD6
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTIGD6
DgiDB (Drug Gene Interaction Database)TIGD6
DoCM (Curated mutations)TIGD6
CIViC (Clinical Interpretations of Variants in Cancer)TIGD6
Cancer3DTIGD6
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTIGD6
MedgenTIGD6
Genetic Testing Registry TIGD6
NextProtQ17RP2 [Medical]
GENETestsTIGD6
Target ValidationTIGD6
Huge Navigator TIGD6 [HugePedia]
ClinGenTIGD6
Clinical trials, drugs, therapy
MyCancerGenomeTIGD6
Protein Interactions : CTDTIGD6
Pharm GKB GenePA38525
PharosQ17RP2
Clinical trialTIGD6
Miscellaneous
canSAR (ICR)TIGD6
HarmonizomeTIGD6
DataMed IndexTIGD6
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTIGD6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 16:25:32 CEST 2021

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