Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TIGD6 (tigger transposable element derived 6)

Identity

Alias_symbol (synonym)DKFZp761E2110
Other alias-
HGNC (Hugo) TIGD6
LocusID (NCBI) 81789
Atlas_Id 74702
Location 5q32  [Link to chromosome band 5q32]
Location_base_pair Starts at 149993123 and ends at 150000608 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TIGD6   18332
Cards
Entrez_Gene (NCBI)TIGD6  81789  tigger transposable element derived 6
Aliases
GeneCards (Weizmann)TIGD6
Ensembl hg19 (Hinxton)ENSG00000164296 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164296 [Gene_View]  chr5:149993123-150000608 [Contig_View]  TIGD6 [Vega]
ICGC DataPortalENSG00000164296
TCGA cBioPortalTIGD6
AceView (NCBI)TIGD6
Genatlas (Paris)TIGD6
WikiGenes81789
SOURCE (Princeton)TIGD6
Genetics Home Reference (NIH)TIGD6
Genomic and cartography
GoldenPath hg38 (UCSC)TIGD6  -     chr5:149993123-150000608 -  5q32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TIGD6  -     5q32   [Description]    (hg19-Feb_2009)
EnsemblTIGD6 - 5q32 [CytoView hg19]  TIGD6 - 5q32 [CytoView hg38]
Mapping of homologs : NCBITIGD6 [Mapview hg19]  TIGD6 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK056604 AK092978 AK096325 AL136539 AM393758
RefSeq transcript (Entrez)NM_001243253 NM_030953
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TIGD6
Cluster EST : UnigeneHs.169333 [ NCBI ]
CGAP (NCI)Hs.169333
Alternative Splicing GalleryENSG00000164296
Gene ExpressionTIGD6 [ NCBI-GEO ]   TIGD6 [ EBI - ARRAY_EXPRESS ]   TIGD6 [ SEEK ]   TIGD6 [ MEM ]
Gene Expression Viewer (FireBrowse)TIGD6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81789
GTEX Portal (Tissue expression)TIGD6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ17RP2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ17RP2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ17RP2
Splice isoforms : SwissVarQ17RP2
PhosPhoSitePlusQ17RP2
Domaine pattern : Prosite (Expaxy)HTH_CENPB (PS51253)    HTH_PSQ (PS50960)   
Domains : Interpro (EBI)DDE_SF_endonuclease_dom    Homeobox-like    HTH_CenpB_DNA-bd_dom    HTH_Psq   
Domain families : Pfam (Sanger)CENP-B_N (PF04218)    DDE_1 (PF03184)    HTH_Tnp_Tc5 (PF03221)   
Domain families : Pfam (NCBI)pfam04218    pfam03184    pfam03221   
Domain families : Smart (EMBL)CENPB (SM00674)  
Conserved Domain (NCBI)TIGD6
DMDM Disease mutations81789
Blocks (Seattle)TIGD6
SuperfamilyQ17RP2
Human Protein AtlasENSG00000164296
Peptide AtlasQ17RP2
HPRD18190
IPIIPI00550495   
Protein Interaction databases
DIP (DOE-UCLA)Q17RP2
IntAct (EBI)Q17RP2
FunCoupENSG00000164296
BioGRIDTIGD6
STRING (EMBL)TIGD6
ZODIACTIGD6
Ontologies - Pathways
QuickGOQ17RP2
Ontology : AmiGODNA binding  nucleus  
Ontology : EGO-EBIDNA binding  nucleus  
NDEx NetworkTIGD6
Atlas of Cancer Signalling NetworkTIGD6
Wikipedia pathwaysTIGD6
Orthology - Evolution
OrthoDB81789
GeneTree (enSembl)ENSG00000164296
Phylogenetic Trees/Animal Genes : TreeFamTIGD6
HOVERGENQ17RP2
HOGENOMQ17RP2
Homologs : HomoloGeneTIGD6
Homology/Alignments : Family Browser (UCSC)TIGD6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTIGD6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TIGD6
dbVarTIGD6
ClinVarTIGD6
1000_GenomesTIGD6 
Exome Variant ServerTIGD6
ExAC (Exome Aggregation Consortium)TIGD6 (select the gene name)
Genetic variants : HAPMAP81789
Genomic Variants (DGV)TIGD6 [DGVbeta]
DECIPHERTIGD6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTIGD6 
Mutations
ICGC Data PortalTIGD6 
TCGA Data PortalTIGD6 
Broad Tumor PortalTIGD6
OASIS PortalTIGD6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTIGD6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTIGD6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TIGD6
DgiDB (Drug Gene Interaction Database)TIGD6
DoCM (Curated mutations)TIGD6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TIGD6 (select a term)
intoGenTIGD6
Cancer3DTIGD6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTIGD6
Genetic Testing Registry TIGD6
NextProtQ17RP2 [Medical]
TSGene81789
GENETestsTIGD6
Target ValidationTIGD6
Huge Navigator TIGD6 [HugePedia]
snp3D : Map Gene to Disease81789
BioCentury BCIQTIGD6
ClinGenTIGD6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD81789
Chemical/Pharm GKB GenePA38525
Clinical trialTIGD6
Miscellaneous
canSAR (ICR)TIGD6 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTIGD6
EVEXTIGD6
GoPubMedTIGD6
iHOPTIGD6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:45:33 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.