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TIGD7 (tigger transposable element derived 7)

Identity

Alias_symbol (synonym)Sancho
Other alias
HGNC (Hugo) TIGD7
LocusID (NCBI) 91151
Atlas_Id 74703
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 3348808 and ends at 3355439 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TIGD7   18331
Cards
Entrez_Gene (NCBI)TIGD7  91151  tigger transposable element derived 7
AliasesSancho
GeneCards (Weizmann)TIGD7
Ensembl hg19 (Hinxton)ENSG00000140993 [Gene_View]  chr16:3348808-3355439 [Contig_View]  TIGD7 [Vega]
Ensembl hg38 (Hinxton)ENSG00000140993 [Gene_View]  chr16:3348808-3355439 [Contig_View]  TIGD7 [Vega]
ICGC DataPortalENSG00000140993
TCGA cBioPortalTIGD7
AceView (NCBI)TIGD7
Genatlas (Paris)TIGD7
WikiGenes91151
SOURCE (Princeton)TIGD7
Genetics Home Reference (NIH)TIGD7
Genomic and cartography
GoldenPath hg19 (UCSC)TIGD7  -     chr16:3348808-3355439 -  16p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TIGD7  -     16p13.3   [Description]    (hg38-Dec_2013)
EnsemblTIGD7 - 16p13.3 [CytoView hg19]  TIGD7 - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBITIGD7 [Mapview hg19]  TIGD7 [Mapview hg38]
OMIM612969   
Gene and transcription
Genbank (Entrez)AF251050 AI925903 AK308054 BC069623 BC069632
RefSeq transcript (Entrez)NM_033208
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_010393 NW_004929400
Consensus coding sequences : CCDS (NCBI)TIGD7
Cluster EST : UnigeneHs.745181 [ NCBI ]
CGAP (NCI)Hs.745181
Alternative Splicing GalleryENSG00000140993
Gene ExpressionTIGD7 [ NCBI-GEO ]   TIGD7 [ EBI - ARRAY_EXPRESS ]   TIGD7 [ SEEK ]   TIGD7 [ MEM ]
Gene Expression Viewer (FireBrowse)TIGD7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)91151
GTEX Portal (Tissue expression)TIGD7
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6NT04   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6NT04  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6NT04
Splice isoforms : SwissVarQ6NT04
PhosPhoSitePlusQ6NT04
Domaine pattern : Prosite (Expaxy)HTH_CENPB (PS51253)    HTH_PSQ (PS50960)   
Domains : Interpro (EBI)DDE_SF_endonuclease_CENPB-like    Homeodomain-like    HTH_CenpB_DNA-bd_dom    HTH_Psq   
Domain families : Pfam (Sanger)CENP-B_N (PF04218)    DDE_1 (PF03184)    HTH_Tnp_Tc5 (PF03221)   
Domain families : Pfam (NCBI)pfam04218    pfam03184    pfam03221   
Domain families : Smart (EMBL)CENPB (SM00674)  
Conserved Domain (NCBI)TIGD7
DMDM Disease mutations91151
Blocks (Seattle)TIGD7
SuperfamilyQ6NT04
Human Protein AtlasENSG00000140993
Peptide AtlasQ6NT04
HPRD11632
IPIIPI00170921   IPI00827806   
Protein Interaction databases
DIP (DOE-UCLA)Q6NT04
IntAct (EBI)Q6NT04
FunCoupENSG00000140993
BioGRIDTIGD7
STRING (EMBL)TIGD7
ZODIACTIGD7
Ontologies - Pathways
QuickGOQ6NT04
Ontology : AmiGODNA binding  protein binding  nucleus  
Ontology : EGO-EBIDNA binding  protein binding  nucleus  
NDEx NetworkTIGD7
Atlas of Cancer Signalling NetworkTIGD7
Wikipedia pathwaysTIGD7
Orthology - Evolution
OrthoDB91151
GeneTree (enSembl)ENSG00000140993
Phylogenetic Trees/Animal Genes : TreeFamTIGD7
HOVERGENQ6NT04
HOGENOMQ6NT04
Homologs : HomoloGeneTIGD7
Homology/Alignments : Family Browser (UCSC)TIGD7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTIGD7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TIGD7
dbVarTIGD7
ClinVarTIGD7
1000_GenomesTIGD7 
Exome Variant ServerTIGD7
ExAC (Exome Aggregation Consortium)TIGD7 (select the gene name)
Genetic variants : HAPMAP91151
Genomic Variants (DGV)TIGD7 [DGVbeta]
DECIPHER (Syndromes)16:3348808-3355439  ENSG00000140993
CONAN: Copy Number AnalysisTIGD7 
Mutations
ICGC Data PortalTIGD7 
TCGA Data PortalTIGD7 
Broad Tumor PortalTIGD7
OASIS PortalTIGD7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTIGD7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTIGD7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TIGD7
DgiDB (Drug Gene Interaction Database)TIGD7
DoCM (Curated mutations)TIGD7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TIGD7 (select a term)
intoGenTIGD7
Cancer3DTIGD7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612969   
Orphanet
MedgenTIGD7
Genetic Testing Registry TIGD7
NextProtQ6NT04 [Medical]
TSGene91151
GENETestsTIGD7
Huge Navigator TIGD7 [HugePedia]
snp3D : Map Gene to Disease91151
BioCentury BCIQTIGD7
ClinGenTIGD7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD91151
Chemical/Pharm GKB GenePA38524
Clinical trialTIGD7
Miscellaneous
canSAR (ICR)TIGD7 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTIGD7
EVEXTIGD7
GoPubMedTIGD7
iHOPTIGD7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:48:08 CET 2017

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