Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TIMD4 (T cell immunoglobulin and mucin domain containing 4)

Identity

Alias (NCBI)SMUCKLER
TIM4
HGNC (Hugo) TIMD4
HGNC Alias symbTIM4
HGNC Previous nameT-cell immunoglobulin and mucin domain containing 4
LocusID (NCBI) 91937
Atlas_Id 51733
Location 5q33.3  [Link to chromosome band 5q33]
Location_base_pair Starts at 156919292 and ends at 156963226 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TIMD4   25132
Cards
Entrez_Gene (NCBI)TIMD4    T cell immunoglobulin and mucin domain containing 4
AliasesSMUCKLER; TIM4
GeneCards (Weizmann)TIMD4
Ensembl hg19 (Hinxton)ENSG00000145850 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000145850 [Gene_View]  ENSG00000145850 [Sequence]  chr5:156919292-156963226 [Contig_View]  TIMD4 [Vega]
ICGC DataPortalENSG00000145850
TCGA cBioPortalTIMD4
AceView (NCBI)TIMD4
Genatlas (Paris)TIMD4
SOURCE (Princeton)TIMD4
Genetics Home Reference (NIH)TIMD4
Genomic and cartography
GoldenPath hg38 (UCSC)TIMD4  -     chr5:156919292-156963226 -  5q33.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TIMD4  -     5q33.3   [Description]    (hg19-Feb_2009)
GoldenPathTIMD4 - 5q33.3 [CytoView hg19]  TIMD4 - 5q33.3 [CytoView hg38]
ImmunoBaseENSG00000145850
Genome Data Viewer NCBITIMD4 [Mapview hg19]  
OMIM610096   
Gene and transcription
Genbank (Entrez)AA843555 AK131025 AK301337 AK312746 BC008988
RefSeq transcript (Entrez)NM_001146726 NM_138379
Consensus coding sequences : CCDS (NCBI)TIMD4
Gene ExpressionTIMD4 [ NCBI-GEO ]   TIMD4 [ EBI - ARRAY_EXPRESS ]   TIMD4 [ SEEK ]   TIMD4 [ MEM ]
Gene Expression Viewer (FireBrowse)TIMD4 [ Firebrowse - Broad ]
GenevisibleExpression of TIMD4 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)91937
GTEX Portal (Tissue expression)TIMD4
Human Protein AtlasENSG00000145850-TIMD4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96H15   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96H15  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96H15
PhosPhoSitePlusQ96H15
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_dom_sf    Ig-like_fold    Ig_sub    Ig_V-set   
Domain families : Pfam (Sanger)V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  
Conserved Domain (NCBI)TIMD4
PDB (RSDB)5DZN    5F7F    5F7H   
PDB Europe5DZN    5F7F    5F7H   
PDB (PDBSum)5DZN    5F7F    5F7H   
PDB (IMB)5DZN    5F7F    5F7H   
Structural Biology KnowledgeBase5DZN    5F7F    5F7H   
SCOP (Structural Classification of Proteins)5DZN    5F7F    5F7H   
CATH (Classification of proteins structures)5DZN    5F7F    5F7H   
SuperfamilyQ96H15
AlphaFold pdb e-kbQ96H15   
Human Protein Atlas [tissue]ENSG00000145850-TIMD4 [tissue]
HPRD15508
Protein Interaction databases
DIP (DOE-UCLA)Q96H15
IntAct (EBI)Q96H15
BioGRIDTIMD4
STRING (EMBL)TIMD4
ZODIACTIMD4
Ontologies - Pathways
QuickGOQ96H15
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkTIMD4
Atlas of Cancer Signalling NetworkTIMD4
Wikipedia pathwaysTIMD4
Orthology - Evolution
OrthoDB91937
GeneTree (enSembl)ENSG00000145850
Phylogenetic Trees/Animal Genes : TreeFamTIMD4
Homologs : HomoloGeneTIMD4
Homology/Alignments : Family Browser (UCSC)TIMD4
Gene fusions - Rearrangements
Fusion : QuiverTIMD4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTIMD4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TIMD4
dbVarTIMD4
ClinVarTIMD4
MonarchTIMD4
1000_GenomesTIMD4 
Exome Variant ServerTIMD4
GNOMAD BrowserENSG00000145850
Varsome BrowserTIMD4
ACMGTIMD4 variants
VarityQ96H15
Genomic Variants (DGV)TIMD4 [DGVbeta]
DECIPHERTIMD4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTIMD4 
Mutations
ICGC Data PortalTIMD4 
TCGA Data PortalTIMD4 
Broad Tumor PortalTIMD4
OASIS PortalTIMD4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTIMD4  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTIMD4
Mutations and Diseases : HGMDTIMD4
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTIMD4
DgiDB (Drug Gene Interaction Database)TIMD4
DoCM (Curated mutations)TIMD4
CIViC (Clinical Interpretations of Variants in Cancer)TIMD4
Cancer3DTIMD4
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610096   
Orphanet
DisGeNETTIMD4
MedgenTIMD4
Genetic Testing Registry TIMD4
NextProtQ96H15 [Medical]
GENETestsTIMD4
Target ValidationTIMD4
Huge Navigator TIMD4 [HugePedia]
ClinGenTIMD4
Clinical trials, drugs, therapy
MyCancerGenomeTIMD4
Protein Interactions : CTDTIMD4
Pharm GKB GenePA134989118
PharosQ96H15
Clinical trialTIMD4
Miscellaneous
canSAR (ICR)TIMD4
HarmonizomeTIMD4
DataMed IndexTIMD4
Probes
Litterature
PubMed52 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTIMD4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:35:06 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.