Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TIMD4 (T-cell immunoglobulin and mucin domain containing 4)

Identity

Other aliasSMUCKLER
TIM4
HGNC (Hugo) TIMD4
LocusID (NCBI) 91937
Atlas_Id 51733
Location 5q33.3  [Link to chromosome band 5q33]
Location_base_pair Starts at 156919282 and ends at 156963255 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TIMD4   25132
Cards
Entrez_Gene (NCBI)TIMD4  91937  T-cell immunoglobulin and mucin domain containing 4
AliasesSMUCKLER; TIM4
GeneCards (Weizmann)TIMD4
Ensembl hg19 (Hinxton)ENSG00000145850 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000145850 [Gene_View]  chr5:156919282-156963255 [Contig_View]  TIMD4 [Vega]
ICGC DataPortalENSG00000145850
TCGA cBioPortalTIMD4
AceView (NCBI)TIMD4
Genatlas (Paris)TIMD4
WikiGenes91937
SOURCE (Princeton)TIMD4
Genetics Home Reference (NIH)TIMD4
Genomic and cartography
GoldenPath hg38 (UCSC)TIMD4  -     chr5:156919282-156963255 -  5q33.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TIMD4  -     5q33.3   [Description]    (hg19-Feb_2009)
EnsemblTIMD4 - 5q33.3 [CytoView hg19]  TIMD4 - 5q33.3 [CytoView hg38]
Mapping of homologs : NCBITIMD4 [Mapview hg19]  TIMD4 [Mapview hg38]
OMIM610096   
Gene and transcription
Genbank (Entrez)AA843555 AK131025 AK301337 AK312746 BC008988
RefSeq transcript (Entrez)NM_001146726 NM_138379
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TIMD4
Cluster EST : UnigeneHs.334907 [ NCBI ]
CGAP (NCI)Hs.334907
Alternative Splicing GalleryENSG00000145850
Gene ExpressionTIMD4 [ NCBI-GEO ]   TIMD4 [ EBI - ARRAY_EXPRESS ]   TIMD4 [ SEEK ]   TIMD4 [ MEM ]
Gene Expression Viewer (FireBrowse)TIMD4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)91937
GTEX Portal (Tissue expression)TIMD4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96H15   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96H15  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96H15
Splice isoforms : SwissVarQ96H15
PhosPhoSitePlusQ96H15
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_sub    Ig_V-set   
Domain families : Pfam (Sanger)V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  
Conserved Domain (NCBI)TIMD4
DMDM Disease mutations91937
Blocks (Seattle)TIMD4
PDB (SRS)5DZN    5F7F    5F7H   
PDB (PDBSum)5DZN    5F7F    5F7H   
PDB (IMB)5DZN    5F7F    5F7H   
PDB (RSDB)5DZN    5F7F    5F7H   
Structural Biology KnowledgeBase5DZN    5F7F    5F7H   
SCOP (Structural Classification of Proteins)5DZN    5F7F    5F7H   
CATH (Classification of proteins structures)5DZN    5F7F    5F7H   
SuperfamilyQ96H15
Human Protein AtlasENSG00000145850
Peptide AtlasQ96H15
HPRD15508
IPIIPI00062700   IPI00879687   IPI00879839   
Protein Interaction databases
DIP (DOE-UCLA)Q96H15
IntAct (EBI)Q96H15
FunCoupENSG00000145850
BioGRIDTIMD4
STRING (EMBL)TIMD4
ZODIACTIMD4
Ontologies - Pathways
QuickGOQ96H15
Ontology : AmiGOphosphatidylserine binding  integral component of membrane  
Ontology : EGO-EBIphosphatidylserine binding  integral component of membrane  
NDEx NetworkTIMD4
Atlas of Cancer Signalling NetworkTIMD4
Wikipedia pathwaysTIMD4
Orthology - Evolution
OrthoDB91937
GeneTree (enSembl)ENSG00000145850
Phylogenetic Trees/Animal Genes : TreeFamTIMD4
HOVERGENQ96H15
HOGENOMQ96H15
Homologs : HomoloGeneTIMD4
Homology/Alignments : Family Browser (UCSC)TIMD4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTIMD4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TIMD4
dbVarTIMD4
ClinVarTIMD4
1000_GenomesTIMD4 
Exome Variant ServerTIMD4
ExAC (Exome Aggregation Consortium)TIMD4 (select the gene name)
Genetic variants : HAPMAP91937
Genomic Variants (DGV)TIMD4 [DGVbeta]
DECIPHERTIMD4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTIMD4 
Mutations
ICGC Data PortalTIMD4 
TCGA Data PortalTIMD4 
Broad Tumor PortalTIMD4
OASIS PortalTIMD4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTIMD4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTIMD4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TIMD4
DgiDB (Drug Gene Interaction Database)TIMD4
DoCM (Curated mutations)TIMD4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TIMD4 (select a term)
intoGenTIMD4
Cancer3DTIMD4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610096   
Orphanet
MedgenTIMD4
Genetic Testing Registry TIMD4
NextProtQ96H15 [Medical]
TSGene91937
GENETestsTIMD4
Target ValidationTIMD4
Huge Navigator TIMD4 [HugePedia]
snp3D : Map Gene to Disease91937
BioCentury BCIQTIMD4
ClinGenTIMD4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD91937
Chemical/Pharm GKB GenePA134989118
Clinical trialTIMD4
Miscellaneous
canSAR (ICR)TIMD4 (select the gene name)
Probes
Litterature
PubMed38 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTIMD4
EVEXTIMD4
GoPubMedTIMD4
iHOPTIMD4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:59:22 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.