Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TIMM13 (translocase of inner mitochondrial membrane 13)

Identity

Alias_namesTIMM13B
translocase of inner mitochondrial membrane 13 (yeast) homolog B
translocase of inner mitochondrial membrane 13 homolog (yeast)
Alias_symbol (synonym)Tim13
Other aliasTIM13
TIM13B
TIMM13A
ppv1
HGNC (Hugo) TIMM13
LocusID (NCBI) 26517
Atlas_Id 42563
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 2425624 and ends at 2427916 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TIMM13 (19p13.3) / BAIAP2 (17q25.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TIMM13   11816
Cards
Entrez_Gene (NCBI)TIMM13  26517  translocase of inner mitochondrial membrane 13
AliasesTIM13; TIM13B; TIMM13A; TIMM13B; 
ppv1
GeneCards (Weizmann)TIMM13
Ensembl hg19 (Hinxton)ENSG00000099800 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000099800 [Gene_View]  chr19:2425624-2427916 [Contig_View]  TIMM13 [Vega]
ICGC DataPortalENSG00000099800
TCGA cBioPortalTIMM13
AceView (NCBI)TIMM13
Genatlas (Paris)TIMM13
WikiGenes26517
SOURCE (Princeton)TIMM13
Genetics Home Reference (NIH)TIMM13
Genomic and cartography
GoldenPath hg38 (UCSC)TIMM13  -     chr19:2425624-2427916 -  19p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TIMM13  -     19p13.3   [Description]    (hg19-Feb_2009)
EnsemblTIMM13 - 19p13.3 [CytoView hg19]  TIMM13 - 19p13.3 [CytoView hg38]
Mapping of homologs : NCBITIMM13 [Mapview hg19]  TIMM13 [Mapview hg38]
OMIM607383   
Gene and transcription
Genbank (Entrez)AF144700 AF152352 AK024764 AL520160 BC008607
RefSeq transcript (Entrez)NM_012458
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TIMM13
Cluster EST : UnigeneHs.75056 [ NCBI ]
CGAP (NCI)Hs.75056
Alternative Splicing GalleryENSG00000099800
Gene ExpressionTIMM13 [ NCBI-GEO ]   TIMM13 [ EBI - ARRAY_EXPRESS ]   TIMM13 [ SEEK ]   TIMM13 [ MEM ]
Gene Expression Viewer (FireBrowse)TIMM13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26517
GTEX Portal (Tissue expression)TIMM13
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y5L4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y5L4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y5L4
Splice isoforms : SwissVarQ9Y5L4
PhosPhoSitePlusQ9Y5L4
Domains : Interpro (EBI)Tim10/DDP_fam_Znf   
Domain families : Pfam (Sanger)zf-Tim10_DDP (PF02953)   
Domain families : Pfam (NCBI)pfam02953   
Conserved Domain (NCBI)TIMM13
DMDM Disease mutations26517
Blocks (Seattle)TIMM13
SuperfamilyQ9Y5L4
Human Protein AtlasENSG00000099800
Peptide AtlasQ9Y5L4
HPRD09573
IPIIPI00001589   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y5L4
IntAct (EBI)Q9Y5L4
FunCoupENSG00000099800
BioGRIDTIMM13
STRING (EMBL)TIMM13
ZODIACTIMM13
Ontologies - Pathways
QuickGOQ9Y5L4
Ontology : AmiGOfibrillar center  mitochondrion  mitochondrial inner membrane  protein targeting to mitochondrion  sensory perception of sound  zinc ion binding  protein transporter activity  mitochondrial intermembrane space protein transporter complex  protein import into mitochondrial inner membrane  chaperone-mediated protein transport  
Ontology : EGO-EBIfibrillar center  mitochondrion  mitochondrial inner membrane  protein targeting to mitochondrion  sensory perception of sound  zinc ion binding  protein transporter activity  mitochondrial intermembrane space protein transporter complex  protein import into mitochondrial inner membrane  chaperone-mediated protein transport  
NDEx NetworkTIMM13
Atlas of Cancer Signalling NetworkTIMM13
Wikipedia pathwaysTIMM13
Orthology - Evolution
OrthoDB26517
GeneTree (enSembl)ENSG00000099800
Phylogenetic Trees/Animal Genes : TreeFamTIMM13
HOVERGENQ9Y5L4
HOGENOMQ9Y5L4
Homologs : HomoloGeneTIMM13
Homology/Alignments : Family Browser (UCSC)TIMM13
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTIMM13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TIMM13
dbVarTIMM13
ClinVarTIMM13
1000_GenomesTIMM13 
Exome Variant ServerTIMM13
ExAC (Exome Aggregation Consortium)TIMM13 (select the gene name)
Genetic variants : HAPMAP26517
Genomic Variants (DGV)TIMM13 [DGVbeta]
DECIPHERTIMM13 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTIMM13 
Mutations
ICGC Data PortalTIMM13 
TCGA Data PortalTIMM13 
Broad Tumor PortalTIMM13
OASIS PortalTIMM13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTIMM13  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTIMM13
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch TIMM13
DgiDB (Drug Gene Interaction Database)TIMM13
DoCM (Curated mutations)TIMM13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TIMM13 (select a term)
intoGenTIMM13
Cancer3DTIMM13(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607383   
Orphanet
MedgenTIMM13
Genetic Testing Registry TIMM13
NextProtQ9Y5L4 [Medical]
TSGene26517
GENETestsTIMM13
Target ValidationTIMM13
Huge Navigator TIMM13 [HugePedia]
snp3D : Map Gene to Disease26517
BioCentury BCIQTIMM13
ClinGenTIMM13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26517
Chemical/Pharm GKB GenePA36522
Clinical trialTIMM13
Miscellaneous
canSAR (ICR)TIMM13 (select the gene name)
Probes
Litterature
PubMed32 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTIMM13
EVEXTIMM13
GoPubMedTIMM13
iHOPTIMM13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 14:09:44 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.