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TIMM17A (translocase of inner mitochondrial membrane 17A)

Identity

Alias_symbol (synonym)TIM17
TIM17A
Other alias
HGNC (Hugo) TIMM17A
LocusID (NCBI) 10440
Atlas_Id 42564
Location 1q32.1  [Link to chromosome band 1q32]
Location_base_pair Starts at 201955491 and ends at 201970661 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
NUF2 (1q23.3) / TIMM17A (1q32.1)TIMM17A (1q32.1) / RASSF5 (1q32.1)TIMM17A (1q32.1) / RTN4 (2p16.1)
NUF2 1q23.3 / TIMM17A 1q32.1TIMM17A 1q32.1 / RASSF5 1q32.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TIMM17A   17315
Cards
Entrez_Gene (NCBI)TIMM17A  10440  translocase of inner mitochondrial membrane 17A
AliasesTIM17; TIM17A
GeneCards (Weizmann)TIMM17A
Ensembl hg19 (Hinxton)ENSG00000134375 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000134375 [Gene_View]  chr1:201955491-201970661 [Contig_View]  TIMM17A [Vega]
ICGC DataPortalENSG00000134375
TCGA cBioPortalTIMM17A
AceView (NCBI)TIMM17A
Genatlas (Paris)TIMM17A
WikiGenes10440
SOURCE (Princeton)TIMM17A
Genetics Home Reference (NIH)TIMM17A
Genomic and cartography
GoldenPath hg38 (UCSC)TIMM17A  -     chr1:201955491-201970661 +  1q32.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TIMM17A  -     1q32.1   [Description]    (hg19-Feb_2009)
EnsemblTIMM17A - 1q32.1 [CytoView hg19]  TIMM17A - 1q32.1 [CytoView hg38]
Mapping of homologs : NCBITIMM17A [Mapview hg19]  TIMM17A [Mapview hg38]
OMIM605057   
Gene and transcription
Genbank (Entrez)AF106622 AK023063 AK315602 AU123184 BC000294
RefSeq transcript (Entrez)NM_006335
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TIMM17A
Cluster EST : UnigeneHs.20716 [ NCBI ]
CGAP (NCI)Hs.20716
Alternative Splicing GalleryENSG00000134375
Gene ExpressionTIMM17A [ NCBI-GEO ]   TIMM17A [ EBI - ARRAY_EXPRESS ]   TIMM17A [ SEEK ]   TIMM17A [ MEM ]
Gene Expression Viewer (FireBrowse)TIMM17A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10440
GTEX Portal (Tissue expression)TIMM17A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ99595   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ99595  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ99595
Splice isoforms : SwissVarQ99595
PhosPhoSitePlusQ99595
Domains : Interpro (EBI)Tim17    Tim17/Tim22/Tim23/PMP24   
Domain families : Pfam (Sanger)Tim17 (PF02466)   
Domain families : Pfam (NCBI)pfam02466   
Conserved Domain (NCBI)TIMM17A
DMDM Disease mutations10440
Blocks (Seattle)TIMM17A
SuperfamilyQ99595
Human Protein AtlasENSG00000134375
Peptide AtlasQ99595
HPRD05449
IPIIPI00016207   
Protein Interaction databases
DIP (DOE-UCLA)Q99595
IntAct (EBI)Q99595
FunCoupENSG00000134375
BioGRIDTIMM17A
STRING (EMBL)TIMM17A
ZODIACTIMM17A
Ontologies - Pathways
QuickGOQ99595
Ontology : AmiGOnucleoplasm  mitochondrion  mitochondrial inner membrane  mitochondrial inner membrane presequence translocase complex  protein targeting to mitochondrion  protein channel activity  P-P-bond-hydrolysis-driven protein transmembrane transporter activity  protein import into mitochondrial matrix  integral component of mitochondrial inner membrane  
Ontology : EGO-EBInucleoplasm  mitochondrion  mitochondrial inner membrane  mitochondrial inner membrane presequence translocase complex  protein targeting to mitochondrion  protein channel activity  P-P-bond-hydrolysis-driven protein transmembrane transporter activity  protein import into mitochondrial matrix  integral component of mitochondrial inner membrane  
NDEx NetworkTIMM17A
Atlas of Cancer Signalling NetworkTIMM17A
Wikipedia pathwaysTIMM17A
Orthology - Evolution
OrthoDB10440
GeneTree (enSembl)ENSG00000134375
Phylogenetic Trees/Animal Genes : TreeFamTIMM17A
HOVERGENQ99595
HOGENOMQ99595
Homologs : HomoloGeneTIMM17A
Homology/Alignments : Family Browser (UCSC)TIMM17A
Gene fusions - Rearrangements
Fusion : MitelmanNUF2/TIMM17A [1q23.3/1q32.1]  [t(1;1)(q23;q32)]  
Fusion : MitelmanTIMM17A/RASSF5 [1q32.1/1q32.1]  [t(1;1)(q32;q32)]  
Fusion: TCGANUF2 1q23.3 TIMM17A 1q32.1 LUAD
Fusion: TCGATIMM17A 1q32.1 RASSF5 1q32.1 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTIMM17A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TIMM17A
dbVarTIMM17A
ClinVarTIMM17A
1000_GenomesTIMM17A 
Exome Variant ServerTIMM17A
ExAC (Exome Aggregation Consortium)TIMM17A (select the gene name)
Genetic variants : HAPMAP10440
Genomic Variants (DGV)TIMM17A [DGVbeta]
DECIPHERTIMM17A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTIMM17A 
Mutations
ICGC Data PortalTIMM17A 
TCGA Data PortalTIMM17A 
Broad Tumor PortalTIMM17A
OASIS PortalTIMM17A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTIMM17A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTIMM17A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch TIMM17A
DgiDB (Drug Gene Interaction Database)TIMM17A
DoCM (Curated mutations)TIMM17A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TIMM17A (select a term)
intoGenTIMM17A
Cancer3DTIMM17A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605057   
Orphanet
MedgenTIMM17A
Genetic Testing Registry TIMM17A
NextProtQ99595 [Medical]
TSGene10440
GENETestsTIMM17A
Huge Navigator TIMM17A [HugePedia]
snp3D : Map Gene to Disease10440
BioCentury BCIQTIMM17A
ClinGenTIMM17A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10440
Chemical/Pharm GKB GenePA38228
Clinical trialTIMM17A
Miscellaneous
canSAR (ICR)TIMM17A (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTIMM17A
EVEXTIMM17A
GoPubMedTIMM17A
iHOPTIMM17A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:41:01 CEST 2017

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