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TIMM21 (translocase of inner mitochondrial membrane 21)

Identity

Alias_namesC18orf55
chromosome 18 open reading frame 55
translocase of inner mitochondrial membrane 21 homolog (yeast)
Alias_symbol (synonym)HSPC154
TIM21
Other alias
HGNC (Hugo) TIMM21
LocusID (NCBI) 29090
Atlas_Id 74704
Location 18q22.3  [Link to chromosome band 18q22]
Location_base_pair Starts at 74148511 and ends at 74158969 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TIMM21 (18q22.3) / HACD3 (15q22.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TIMM21   25010
Cards
Entrez_Gene (NCBI)TIMM21  29090  translocase of inner mitochondrial membrane 21
AliasesC18orf55; HSPC154; TIM21
GeneCards (Weizmann)TIMM21
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr18:74148511-74158969 [Contig_View]  TIMM21 [Vega]
TCGA cBioPortalTIMM21
AceView (NCBI)TIMM21
Genatlas (Paris)TIMM21
WikiGenes29090
SOURCE (Princeton)TIMM21
Genetics Home Reference (NIH)TIMM21
Genomic and cartography
GoldenPath hg38 (UCSC)TIMM21  -     chr18:74148511-74158969 +  18q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TIMM21  -     18q22.3   [Description]    (hg19-Feb_2009)
EnsemblTIMM21 - 18q22.3 [CytoView hg19]  TIMM21 - 18q22.3 [CytoView hg38]
Mapping of homologs : NCBITIMM21 [Mapview hg19]  TIMM21 [Mapview hg38]
OMIM615180   
Gene and transcription
Genbank (Entrez)AF161503 AK289923 AK313936 BC000892 BG431414
RefSeq transcript (Entrez)NM_014177
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TIMM21
Cluster EST : UnigeneHs.532835 [ NCBI ]
CGAP (NCI)Hs.532835
Gene ExpressionTIMM21 [ NCBI-GEO ]   TIMM21 [ EBI - ARRAY_EXPRESS ]   TIMM21 [ SEEK ]   TIMM21 [ MEM ]
Gene Expression Viewer (FireBrowse)TIMM21 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29090
GTEX Portal (Tissue expression)TIMM21
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BVV7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BVV7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BVV7
Splice isoforms : SwissVarQ9BVV7
PhosPhoSitePlusQ9BVV7
Domains : Interpro (EBI)Tim21   
Domain families : Pfam (Sanger)TIM21 (PF08294)   
Domain families : Pfam (NCBI)pfam08294   
Conserved Domain (NCBI)TIMM21
DMDM Disease mutations29090
Blocks (Seattle)TIMM21
SuperfamilyQ9BVV7
Peptide AtlasQ9BVV7
HPRD13706
IPIIPI00306439   
Protein Interaction databases
DIP (DOE-UCLA)Q9BVV7
IntAct (EBI)Q9BVV7
BioGRIDTIMM21
STRING (EMBL)TIMM21
ZODIACTIMM21
Ontologies - Pathways
QuickGOQ9BVV7
Ontology : AmiGOmolecular_function  protein binding  mitochondrial inner membrane presequence translocase complex  integral component of membrane  protein import into mitochondrial matrix  mitochondrial respiratory chain complex I assembly  mitochondrial respiratory chain complex IV assembly  
Ontology : EGO-EBImolecular_function  protein binding  mitochondrial inner membrane presequence translocase complex  integral component of membrane  protein import into mitochondrial matrix  mitochondrial respiratory chain complex I assembly  mitochondrial respiratory chain complex IV assembly  
NDEx NetworkTIMM21
Atlas of Cancer Signalling NetworkTIMM21
Wikipedia pathwaysTIMM21
Orthology - Evolution
OrthoDB29090
Phylogenetic Trees/Animal Genes : TreeFamTIMM21
HOVERGENQ9BVV7
HOGENOMQ9BVV7
Homologs : HomoloGeneTIMM21
Homology/Alignments : Family Browser (UCSC)TIMM21
Gene fusions - Rearrangements
Fusion: Tumor Portal TIMM21
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTIMM21 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TIMM21
dbVarTIMM21
ClinVarTIMM21
1000_GenomesTIMM21 
Exome Variant ServerTIMM21
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP29090
Genomic Variants (DGV)TIMM21 [DGVbeta]
DECIPHERTIMM21 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTIMM21 
Mutations
ICGC Data PortalTIMM21 
TCGA Data PortalTIMM21 
Broad Tumor PortalTIMM21
OASIS PortalTIMM21 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTIMM21
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TIMM21
DgiDB (Drug Gene Interaction Database)TIMM21
DoCM (Curated mutations)TIMM21 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TIMM21 (select a term)
intoGenTIMM21
Cancer3DTIMM21(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615180   
Orphanet
MedgenTIMM21
Genetic Testing Registry TIMM21
NextProtQ9BVV7 [Medical]
TSGene29090
GENETestsTIMM21
Target ValidationTIMM21
Huge Navigator TIMM21 [HugePedia]
snp3D : Map Gene to Disease29090
BioCentury BCIQTIMM21
ClinGenTIMM21
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD29090
Chemical/Pharm GKB GenePA134897360
Clinical trialTIMM21
Miscellaneous
canSAR (ICR)TIMM21 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTIMM21
EVEXTIMM21
GoPubMedTIMM21
iHOPTIMM21
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:32:25 CET 2017

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