Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TIMM21 (translocase of inner mitochondrial membrane 21)

Identity

Alias (NCBI)C18orf55
HSPC154
TIM21
HGNC (Hugo) TIMM21
HGNC Alias symbHSPC154
TIM21
HGNC Previous nameC18orf55
HGNC Previous namechromosome 18 open reading frame 55
 translocase of inner mitochondrial membrane 21 homolog (yeast)
LocusID (NCBI) 29090
Atlas_Id 74704
Location 18q22.3  [Link to chromosome band 18q22]
Location_base_pair Starts at 74148523 and ends at 74160531 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TIMM21 (18q22.3) / HACD3 (15q22.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TIMM21   25010
Cards
Entrez_Gene (NCBI)TIMM21    translocase of inner mitochondrial membrane 21
AliasesC18orf55; HSPC154; TIM21
GeneCards (Weizmann)TIMM21
Ensembl hg19 (Hinxton)ENSG00000075336 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000075336 [Gene_View]  ENSG00000075336 [Sequence]  chr18:74148523-74160531 [Contig_View]  TIMM21 [Vega]
ICGC DataPortalENSG00000075336
TCGA cBioPortalTIMM21
AceView (NCBI)TIMM21
Genatlas (Paris)TIMM21
SOURCE (Princeton)TIMM21
Genetics Home Reference (NIH)TIMM21
Genomic and cartography
GoldenPath hg38 (UCSC)TIMM21  -     chr18:74148523-74160531 +  18q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TIMM21  -     18q22.3   [Description]    (hg19-Feb_2009)
GoldenPathTIMM21 - 18q22.3 [CytoView hg19]  TIMM21 - 18q22.3 [CytoView hg38]
ImmunoBaseENSG00000075336
Genome Data Viewer NCBITIMM21 [Mapview hg19]  
OMIM615180   
Gene and transcription
Genbank (Entrez)AF161503 AK289923 AK313936 BC000892 BG431414
RefSeq transcript (Entrez)NM_014177
Consensus coding sequences : CCDS (NCBI)TIMM21
Gene ExpressionTIMM21 [ NCBI-GEO ]   TIMM21 [ EBI - ARRAY_EXPRESS ]   TIMM21 [ SEEK ]   TIMM21 [ MEM ]
Gene Expression Viewer (FireBrowse)TIMM21 [ Firebrowse - Broad ]
GenevisibleExpression of TIMM21 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29090
GTEX Portal (Tissue expression)TIMM21
Human Protein AtlasENSG00000075336-TIMM21 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BVV7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BVV7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BVV7
PhosPhoSitePlusQ9BVV7
Domains : Interpro (EBI)Tim21    Tim21_IMS_sf   
Domain families : Pfam (Sanger)TIM21 (PF08294)   
Domain families : Pfam (NCBI)pfam08294   
Conserved Domain (NCBI)TIMM21
SuperfamilyQ9BVV7
AlphaFold pdb e-kbQ9BVV7   
Human Protein Atlas [tissue]ENSG00000075336-TIMM21 [tissue]
HPRD13706
Protein Interaction databases
DIP (DOE-UCLA)Q9BVV7
IntAct (EBI)Q9BVV7
BioGRIDTIMM21
STRING (EMBL)TIMM21
ZODIACTIMM21
Ontologies - Pathways
QuickGOQ9BVV7
Ontology : AmiGOmolecular_function  protein binding  TIM23 mitochondrial import inner membrane translocase complex  TIM23 mitochondrial import inner membrane translocase complex  integral component of membrane  protein import into mitochondrial matrix  protein import into mitochondrial matrix  mitochondrial respiratory chain complex I assembly  mitochondrial cytochrome c oxidase assembly  
Ontology : EGO-EBImolecular_function  protein binding  TIM23 mitochondrial import inner membrane translocase complex  TIM23 mitochondrial import inner membrane translocase complex  integral component of membrane  protein import into mitochondrial matrix  protein import into mitochondrial matrix  mitochondrial respiratory chain complex I assembly  mitochondrial cytochrome c oxidase assembly  
NDEx NetworkTIMM21
Atlas of Cancer Signalling NetworkTIMM21
Wikipedia pathwaysTIMM21
Orthology - Evolution
OrthoDB29090
GeneTree (enSembl)ENSG00000075336
Phylogenetic Trees/Animal Genes : TreeFamTIMM21
Homologs : HomoloGeneTIMM21
Homology/Alignments : Family Browser (UCSC)TIMM21
Gene fusions - Rearrangements
Fusion : QuiverTIMM21
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTIMM21 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TIMM21
dbVarTIMM21
ClinVarTIMM21
MonarchTIMM21
1000_GenomesTIMM21 
Exome Variant ServerTIMM21
GNOMAD BrowserENSG00000075336
Varsome BrowserTIMM21
ACMGTIMM21 variants
VarityQ9BVV7
Genomic Variants (DGV)TIMM21 [DGVbeta]
DECIPHERTIMM21 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTIMM21 
Mutations
ICGC Data PortalTIMM21 
TCGA Data PortalTIMM21 
Broad Tumor PortalTIMM21
OASIS PortalTIMM21 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTIMM21  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTIMM21
Mutations and Diseases : HGMDTIMM21
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTIMM21
DgiDB (Drug Gene Interaction Database)TIMM21
DoCM (Curated mutations)TIMM21
CIViC (Clinical Interpretations of Variants in Cancer)TIMM21
Cancer3DTIMM21
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615180   
Orphanet
DisGeNETTIMM21
MedgenTIMM21
Genetic Testing Registry TIMM21
NextProtQ9BVV7 [Medical]
GENETestsTIMM21
Target ValidationTIMM21
Huge Navigator TIMM21 [HugePedia]
ClinGenTIMM21
Clinical trials, drugs, therapy
MyCancerGenomeTIMM21
Protein Interactions : CTDTIMM21
Pharm GKB GenePA134897360
PharosQ9BVV7
Clinical trialTIMM21
Miscellaneous
canSAR (ICR)TIMM21
HarmonizomeTIMM21
DataMed IndexTIMM21
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTIMM21
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 16:25:32 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.