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TIMM23B (translocase of inner mitochondrial membrane 23 homolog B)

Identity

Alias_namestranslocase of inner mitochondrial membrane 23 homolog B (yeast)
Alias_symbol (synonym)bA592B15.7
Other alias
HGNC (Hugo) TIMM23B
LocusID (NCBI) 100652748
Atlas_Id 74706
Location 10q11.23  [Link to chromosome band 10q11]
Location_base_pair Starts at 49942033 and ends at 49974850 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TIMM23B (10q11.23) / LINC00843 ()

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TIMM23B   23581
Cards
Entrez_Gene (NCBI)TIMM23B  100652748  translocase of inner mitochondrial membrane 23 homolog B
AliasesbA592B15.7
GeneCards (Weizmann)TIMM23B
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr10:49942033-49974850 [Contig_View]  TIMM23B [Vega]
TCGA cBioPortalTIMM23B
AceView (NCBI)TIMM23B
Genatlas (Paris)TIMM23B
WikiGenes100652748
SOURCE (Princeton)TIMM23B
Genetics Home Reference (NIH)TIMM23B
Genomic and cartography
GoldenPath hg38 (UCSC)TIMM23B  -     chr10:49942033-49974850 +  10q11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TIMM23B  -     10q11.23   [Description]    (hg19-Feb_2009)
EnsemblTIMM23B - 10q11.23 [CytoView hg19]  TIMM23B - 10q11.23 [CytoView hg38]
Mapping of homologs : NCBITIMM23B [Mapview hg19]  TIMM23B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK098044 AK293228 AK295227 AK295370 AK316490
RefSeq transcript (Entrez)NM_001290117 NM_001290118
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TIMM23B
Cluster EST : UnigeneHs.524308 [ NCBI ]
CGAP (NCI)Hs.524308
Gene ExpressionTIMM23B [ NCBI-GEO ]   TIMM23B [ EBI - ARRAY_EXPRESS ]   TIMM23B [ SEEK ]   TIMM23B [ MEM ]
Gene Expression Viewer (FireBrowse)TIMM23B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100652748
GTEX Portal (Tissue expression)TIMM23B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5SRD1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5SRD1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5SRD1
Splice isoforms : SwissVarQ5SRD1
PhosPhoSitePlusQ5SRD1
Domains : Interpro (EBI)Tim17/Tim22/Tim23/PMP24    Tim23   
Domain families : Pfam (Sanger)Tim17 (PF02466)   
Domain families : Pfam (NCBI)pfam02466   
Conserved Domain (NCBI)TIMM23B
DMDM Disease mutations100652748
Blocks (Seattle)TIMM23B
SuperfamilyQ5SRD1
Peptide AtlasQ5SRD1
Protein Interaction databases
DIP (DOE-UCLA)Q5SRD1
IntAct (EBI)Q5SRD1
BioGRIDTIMM23B
STRING (EMBL)TIMM23B
ZODIACTIMM23B
Ontologies - Pathways
QuickGOQ5SRD1
Ontology : AmiGOmolecular_function  cellular_component  mitochondrial inner membrane presequence translocase complex  biological_process  protein channel activity  P-P-bond-hydrolysis-driven protein transmembrane transporter activity  protein import into mitochondrial matrix  integral component of mitochondrial inner membrane  
Ontology : EGO-EBImolecular_function  cellular_component  mitochondrial inner membrane presequence translocase complex  biological_process  protein channel activity  P-P-bond-hydrolysis-driven protein transmembrane transporter activity  protein import into mitochondrial matrix  integral component of mitochondrial inner membrane  
NDEx NetworkTIMM23B
Atlas of Cancer Signalling NetworkTIMM23B
Wikipedia pathwaysTIMM23B
Orthology - Evolution
OrthoDB100652748
Phylogenetic Trees/Animal Genes : TreeFamTIMM23B
HOVERGENQ5SRD1
HOGENOMQ5SRD1
Homologs : HomoloGeneTIMM23B
Homology/Alignments : Family Browser (UCSC)TIMM23B
Gene fusions - Rearrangements
Tumor Fusion PortalTIMM23B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTIMM23B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TIMM23B
dbVarTIMM23B
ClinVarTIMM23B
1000_GenomesTIMM23B 
Exome Variant ServerTIMM23B
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP100652748
Genomic Variants (DGV)TIMM23B [DGVbeta]
DECIPHERTIMM23B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTIMM23B 
Mutations
ICGC Data PortalTIMM23B 
TCGA Data PortalTIMM23B 
Broad Tumor PortalTIMM23B
OASIS PortalTIMM23B [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTIMM23B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TIMM23B
DgiDB (Drug Gene Interaction Database)TIMM23B
DoCM (Curated mutations)TIMM23B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TIMM23B (select a term)
intoGenTIMM23B
Cancer3DTIMM23B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTIMM23B
MedgenTIMM23B
Genetic Testing Registry TIMM23B
NextProtQ5SRD1 [Medical]
TSGene100652748
GENETestsTIMM23B
Target ValidationTIMM23B
Huge Navigator TIMM23B [HugePedia]
snp3D : Map Gene to Disease100652748
BioCentury BCIQTIMM23B
ClinGenTIMM23B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100652748
Chemical/Pharm GKB GenePA134877974
Clinical trialTIMM23B
Miscellaneous
canSAR (ICR)TIMM23B (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTIMM23B
EVEXTIMM23B
GoPubMedTIMM23B
iHOPTIMM23B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:22:42 CET 2017

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