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TIMMDC1 (translocase of inner mitochondrial membrane domain containing 1)

Identity

Alias_namesC3orf1
chromosome 3 open reading frame 1
Alias_symbol (synonym)FLJ22597
Other alias
HGNC (Hugo) TIMMDC1
LocusID (NCBI) 51300
Atlas_Id 74707
Location 3q13.33  [Link to chromosome band 3q13]
Location_base_pair Starts at 119217368 and ends at 119243125 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
RNASEK-C17orf49 (17p13.1) / TIMMDC1 (3q13.33)TIMMDC1 (3q13.33) / FAM160B1 (10q25.3)TIMMDC1 (3q13.33) / RBL2 (16q12.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TIMMDC1   1321
Cards
Entrez_Gene (NCBI)TIMMDC1  51300  translocase of inner mitochondrial membrane domain containing 1
AliasesC3orf1
GeneCards (Weizmann)TIMMDC1
Ensembl hg19 (Hinxton) [Gene_View]  chr3:119217368-119243125 [Contig_View]  TIMMDC1 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr3:119217368-119243125 [Contig_View]  TIMMDC1 [Vega]
TCGA cBioPortalTIMMDC1
AceView (NCBI)TIMMDC1
Genatlas (Paris)TIMMDC1
WikiGenes51300
SOURCE (Princeton)TIMMDC1
Genetics Home Reference (NIH)TIMMDC1
Genomic and cartography
GoldenPath hg19 (UCSC)TIMMDC1  -     chr3:119217368-119243125 +  3q13.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TIMMDC1  -     3q13.33   [Description]    (hg38-Dec_2013)
EnsemblTIMMDC1 - 3q13.33 [CytoView hg19]  TIMMDC1 - 3q13.33 [CytoView hg38]
Mapping of homologs : NCBITIMMDC1 [Mapview hg19]  TIMMDC1 [Mapview hg38]
OMIM615534   
Gene and transcription
Genbank (Entrez)AF139077 AF210057 AK026250 AK225954 AL136622
RefSeq transcript (Entrez)NM_016589
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_005612 NW_004929311
Consensus coding sequences : CCDS (NCBI)TIMMDC1
Cluster EST : UnigeneHs.477287 [ NCBI ]
CGAP (NCI)Hs.477287
Gene ExpressionTIMMDC1 [ NCBI-GEO ]   TIMMDC1 [ EBI - ARRAY_EXPRESS ]   TIMMDC1 [ SEEK ]   TIMMDC1 [ MEM ]
Gene Expression Viewer (FireBrowse)TIMMDC1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51300
GTEX Portal (Tissue expression)TIMMDC1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NPL8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NPL8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NPL8
Splice isoforms : SwissVarQ9NPL8
PhosPhoSitePlusQ9NPL8
Domains : Interpro (EBI)Tim17/Tim22/Tim23/PMP24   
Domain families : Pfam (Sanger)Tim17 (PF02466)   
Domain families : Pfam (NCBI)pfam02466   
Conserved Domain (NCBI)TIMMDC1
DMDM Disease mutations51300
Blocks (Seattle)TIMMDC1
SuperfamilyQ9NPL8
Peptide AtlasQ9NPL8
HPRD12817
IPIIPI00299387   IPI00791540   IPI00947167   IPI00789388   IPI00946129   IPI00984276   IPI00945609   IPI00945425   
Protein Interaction databases
DIP (DOE-UCLA)Q9NPL8
IntAct (EBI)Q9NPL8
BioGRIDTIMMDC1
STRING (EMBL)TIMMDC1
ZODIACTIMMDC1
Ontologies - Pathways
QuickGOQ9NPL8
Ontology : AmiGOprotein binding  nucleoplasm  mitochondrion  integral component of membrane  mitochondrial membrane  
Ontology : EGO-EBIprotein binding  nucleoplasm  mitochondrion  integral component of membrane  mitochondrial membrane  
NDEx NetworkTIMMDC1
Atlas of Cancer Signalling NetworkTIMMDC1
Wikipedia pathwaysTIMMDC1
Orthology - Evolution
OrthoDB51300
Phylogenetic Trees/Animal Genes : TreeFamTIMMDC1
HOVERGENQ9NPL8
HOGENOMQ9NPL8
Homologs : HomoloGeneTIMMDC1
Homology/Alignments : Family Browser (UCSC)TIMMDC1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTIMMDC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TIMMDC1
dbVarTIMMDC1
ClinVarTIMMDC1
1000_GenomesTIMMDC1 
Exome Variant ServerTIMMDC1
ExAC (Exome Aggregation Consortium)TIMMDC1 (select the gene name)
Genetic variants : HAPMAP51300
Genomic Variants (DGV)TIMMDC1 [DGVbeta]
DECIPHER (Syndromes)3:119217368-119243125  
CONAN: Copy Number AnalysisTIMMDC1 
Mutations
ICGC Data PortalTIMMDC1 
TCGA Data PortalTIMMDC1 
Broad Tumor PortalTIMMDC1
OASIS PortalTIMMDC1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTIMMDC1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTIMMDC1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TIMMDC1
DgiDB (Drug Gene Interaction Database)TIMMDC1
DoCM (Curated mutations)TIMMDC1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TIMMDC1 (select a term)
intoGenTIMMDC1
Cancer3DTIMMDC1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615534   
Orphanet
MedgenTIMMDC1
Genetic Testing Registry TIMMDC1
NextProtQ9NPL8 [Medical]
TSGene51300
GENETestsTIMMDC1
Huge Navigator TIMMDC1 [HugePedia]
snp3D : Map Gene to Disease51300
BioCentury BCIQTIMMDC1
ClinGenTIMMDC1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51300
Chemical/Pharm GKB GenePA25900
Clinical trialTIMMDC1
Miscellaneous
canSAR (ICR)TIMMDC1 (select the gene name)
Probes
Litterature
PubMed28 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTIMMDC1
EVEXTIMMDC1
GoPubMedTIMMDC1
iHOPTIMMDC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:48:09 CET 2017

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