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TINAG (tubulointerstitial nephritis antigen)

Identity

Other aliasTIN-AG
HGNC (Hugo) TINAG
LocusID (NCBI) 27283
Atlas_Id 74708
Location 6p12.1  [Link to chromosome band 6p12]
Location_base_pair Starts at 54308405 and ends at 54390152 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TINAG   14599
Cards
Entrez_Gene (NCBI)TINAG  27283  tubulointerstitial nephritis antigen
AliasesTIN-AG
GeneCards (Weizmann)TINAG
Ensembl hg19 (Hinxton)ENSG00000137251 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000137251 [Gene_View]  ENSG00000137251 [Sequence]  chr6:54308405-54390152 [Contig_View]  TINAG [Vega]
ICGC DataPortalENSG00000137251
TCGA cBioPortalTINAG
AceView (NCBI)TINAG
Genatlas (Paris)TINAG
WikiGenes27283
SOURCE (Princeton)TINAG
Genetics Home Reference (NIH)TINAG
Genomic and cartography
GoldenPath hg38 (UCSC)TINAG  -     chr6:54308405-54390152 +  6p12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TINAG  -     6p12.1   [Description]    (hg19-Feb_2009)
EnsemblTINAG - 6p12.1 [CytoView hg19]  TINAG - 6p12.1 [CytoView hg38]
Mapping of homologs : NCBITINAG [Mapview hg19]  TINAG [Mapview hg38]
OMIM606749   
Gene and transcription
Genbank (Entrez)AB022277 AF195116 AF195117 AK312918 AW027949
RefSeq transcript (Entrez)NM_014464
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TINAG
Cluster EST : UnigeneHs.127011 [ NCBI ]
CGAP (NCI)Hs.127011
Alternative Splicing GalleryENSG00000137251
Gene ExpressionTINAG [ NCBI-GEO ]   TINAG [ EBI - ARRAY_EXPRESS ]   TINAG [ SEEK ]   TINAG [ MEM ]
Gene Expression Viewer (FireBrowse)TINAG [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)27283
GTEX Portal (Tissue expression)TINAG
Human Protein AtlasENSG00000137251-TINAG [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UJW2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UJW2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UJW2
Splice isoforms : SwissVarQ9UJW2
PhosPhoSitePlusQ9UJW2
Domaine pattern : Prosite (Expaxy)SMB_1 (PS00524)    SMB_2 (PS50958)    THIOL_PROTEASE_ASN (PS00640)   
Domains : Interpro (EBI)Pept_asp_AS    Peptidase_C1A    Peptidase_C1A_C    Somatomedin_B_dom    TINAG   
Domain families : Pfam (Sanger)Peptidase_C1 (PF00112)    Somatomedin_B (PF01033)   
Domain families : Pfam (NCBI)pfam00112    pfam01033   
Domain families : Smart (EMBL)Pept_C1 (SM00645)  SO (SM00201)  
Conserved Domain (NCBI)TINAG
DMDM Disease mutations27283
Blocks (Seattle)TINAG
SuperfamilyQ9UJW2
Human Protein Atlas [tissue]ENSG00000137251-TINAG [tissue]
Peptide AtlasQ9UJW2
HPRD09483
IPIIPI00099386   IPI00478705   IPI00514184   IPI00513720   
Protein Interaction databases
DIP (DOE-UCLA)Q9UJW2
IntAct (EBI)Q9UJW2
FunCoupENSG00000137251
BioGRIDTINAG
STRING (EMBL)TINAG
ZODIACTINAG
Ontologies - Pathways
QuickGOQ9UJW2
Ontology : AmiGO###############################################################################################################################################################################################################################################################                        
Ontology : EGO-EBI###############################################################################################################################################################################################################################################################                        
NDEx NetworkTINAG
Atlas of Cancer Signalling NetworkTINAG
Wikipedia pathwaysTINAG
Orthology - Evolution
OrthoDB27283
GeneTree (enSembl)ENSG00000137251
Phylogenetic Trees/Animal Genes : TreeFamTINAG
HOVERGENQ9UJW2
HOGENOMQ9UJW2
Homologs : HomoloGeneTINAG
Homology/Alignments : Family Browser (UCSC)TINAG
Gene fusions - Rearrangements
Fusion : QuiverTINAG
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTINAG [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TINAG
dbVarTINAG
ClinVarTINAG
1000_GenomesTINAG 
Exome Variant ServerTINAG
ExAC (Exome Aggregation Consortium)ENSG00000137251
GNOMAD BrowserENSG00000137251
Varsome BrowserTINAG
Genetic variants : HAPMAP27283
Genomic Variants (DGV)TINAG [DGVbeta]
DECIPHERTINAG [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTINAG 
Mutations
ICGC Data PortalTINAG 
TCGA Data PortalTINAG 
Broad Tumor PortalTINAG
OASIS PortalTINAG [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTINAG  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTINAG
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TINAG
DgiDB (Drug Gene Interaction Database)TINAG
DoCM (Curated mutations)TINAG (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TINAG (select a term)
intoGenTINAG
Cancer3DTINAG(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606749   
Orphanet
DisGeNETTINAG
MedgenTINAG
Genetic Testing Registry TINAG
NextProtQ9UJW2 [Medical]
TSGene27283
GENETestsTINAG
Target ValidationTINAG
Huge Navigator TINAG [HugePedia]
snp3D : Map Gene to Disease27283
BioCentury BCIQTINAG
ClinGenTINAG
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD27283
Chemical/Pharm GKB GenePA37905
Clinical trialTINAG
Miscellaneous
canSAR (ICR)TINAG (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTINAG
EVEXTINAG
GoPubMedTINAG
iHOPTINAG
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:34:54 CEST 2018

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