Atlas of Genetics and Cytogenetics in Oncology and Haematology

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TINAGL1 (tubulointerstitial nephritis antigen like 1)

Identity

Alias (NCBI)ARG1
LCN7
LIECG3
TINAGRP
HGNC (Hugo) TINAGL1
HGNC Alias symbP3ECSL
LIECG3
ARG1
TINAGRP
HGNC Alias nameandrogen regulated gene 1
HGNC Previous nameLCN7
HGNC Previous namelipocalin 7
 TINAG-like 1
LocusID (NCBI) 64129
Atlas_Id 58229
Location 1p35.2  [Link to chromosome band 1p35]
Location_base_pair Starts at 31576515 and ends at 31587686 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
OFD1 (Xp22.2) / TINAGL1 (1p35.2)TINAGL1 (1p35.2) / TACC2 (10q26.13)TINAGL1 (1p35.2) / TINAGL1 (1p35.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

 

Nomenclature
HGNC (Hugo)TINAGL1   19168
Cards
Entrez_Gene (NCBI)TINAGL1    tubulointerstitial nephritis antigen like 1
AliasesARG1; LCN7; LIECG3; TINAGRP
GeneCards (Weizmann)TINAGL1
Ensembl hg19 (Hinxton)ENSG00000142910 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000142910 [Gene_View]  ENSG00000142910 [Sequence]  chr1:31576515-31587686 [Contig_View]  TINAGL1 [Vega]
ICGC DataPortalENSG00000142910
TCGA cBioPortalTINAGL1
AceView (NCBI)TINAGL1
Genatlas (Paris)TINAGL1
SOURCE (Princeton)TINAGL1
Genetics Home Reference (NIH)TINAGL1
Genomic and cartography
GoldenPath hg38 (UCSC)TINAGL1  -     chr1:31576515-31587686 +  1p35.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TINAGL1  -     1p35.2   [Description]    (hg19-Feb_2009)
GoldenPathTINAGL1 - 1p35.2 [CytoView hg19]  TINAGL1 - 1p35.2 [CytoView hg38]
ImmunoBaseENSG00000142910
Genome Data Viewer NCBITINAGL1 [Mapview hg19]  
OMIM616064   
Gene and transcription
Genbank (Entrez)AB050716 AF205436 AF236150 AF289569 AK027839
RefSeq transcript (Entrez)NM_001204414 NM_001204415 NM_022164
Consensus coding sequences : CCDS (NCBI)TINAGL1
Gene ExpressionTINAGL1 [ NCBI-GEO ]   TINAGL1 [ EBI - ARRAY_EXPRESS ]   TINAGL1 [ SEEK ]   TINAGL1 [ MEM ]
Gene Expression Viewer (FireBrowse)TINAGL1 [ Firebrowse - Broad ]
GenevisibleExpression of TINAGL1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64129
GTEX Portal (Tissue expression)TINAGL1
Human Protein AtlasENSG00000142910-TINAGL1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9GZM7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9GZM7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9GZM7
PhosPhoSitePlusQ9GZM7
Domaine pattern : Prosite (Expaxy)SMB_1 (PS00524)    SMB_2 (PS50958)    THIOL_PROTEASE_HIS (PS00639)   
Domains : Interpro (EBI)Papain-like_cys_pep_sf    Pept_his_AS    Peptidase_C1A_C    Somatomedin_B_dom   
Domain families : Pfam (Sanger)Peptidase_C1 (PF00112)   
Domain families : Pfam (NCBI)pfam00112   
Domain families : Smart (EMBL)Pept_C1 (SM00645)  
Conserved Domain (NCBI)TINAGL1
SuperfamilyQ9GZM7
AlphaFold pdb e-kbQ9GZM7   
Human Protein Atlas [tissue]ENSG00000142910-TINAGL1 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q9GZM7
IntAct (EBI)Q9GZM7
BioGRIDTINAGL1
STRING (EMBL)TINAGL1
ZODIACTINAGL1
Ontologies - Pathways
QuickGOQ9GZM7
Ontology : AmiGOextracellular matrix structural constituent  extracellular matrix structural constituent  protein binding  extracellular region  extracellular space  extracellular space  lysosome  proteolysis  cysteine-type peptidase activity  endosomal transport  laminin binding  collagen-containing extracellular matrix  collagen-containing extracellular matrix  extracellular exosome  
Ontology : EGO-EBIextracellular matrix structural constituent  extracellular matrix structural constituent  protein binding  extracellular region  extracellular space  extracellular space  lysosome  proteolysis  cysteine-type peptidase activity  endosomal transport  laminin binding  collagen-containing extracellular matrix  collagen-containing extracellular matrix  extracellular exosome  
NDEx NetworkTINAGL1
Atlas of Cancer Signalling NetworkTINAGL1
Wikipedia pathwaysTINAGL1
Orthology - Evolution
OrthoDB64129
GeneTree (enSembl)ENSG00000142910
Phylogenetic Trees/Animal Genes : TreeFamTINAGL1
Homologs : HomoloGeneTINAGL1
Homology/Alignments : Family Browser (UCSC)TINAGL1
Gene fusions - Rearrangements
Fusion : QuiverTINAGL1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTINAGL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TINAGL1
dbVarTINAGL1
ClinVarTINAGL1
MonarchTINAGL1
1000_GenomesTINAGL1 
Exome Variant ServerTINAGL1
GNOMAD BrowserENSG00000142910
Varsome BrowserTINAGL1
ACMGTINAGL1 variants
VarityQ9GZM7
Genomic Variants (DGV)TINAGL1 [DGVbeta]
DECIPHERTINAGL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTINAGL1 
Mutations
ICGC Data PortalTINAGL1 
TCGA Data PortalTINAGL1 
Broad Tumor PortalTINAGL1
OASIS PortalTINAGL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTINAGL1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTINAGL1
Mutations and Diseases : HGMDTINAGL1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTINAGL1
DgiDB (Drug Gene Interaction Database)TINAGL1
DoCM (Curated mutations)TINAGL1
CIViC (Clinical Interpretations of Variants in Cancer)TINAGL1
Cancer3DTINAGL1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616064   
Orphanet
DisGeNETTINAGL1
MedgenTINAGL1
Genetic Testing Registry TINAGL1
NextProtQ9GZM7 [Medical]
GENETestsTINAGL1
Target ValidationTINAGL1
Huge Navigator TINAGL1 [HugePedia]
ClinGenTINAGL1
Clinical trials, drugs, therapy
MyCancerGenomeTINAGL1
Protein Interactions : CTDTINAGL1
PharosQ9GZM7
Clinical trialTINAGL1
Miscellaneous
canSAR (ICR)TINAGL1
HarmonizomeTINAGL1
DataMed IndexTINAGL1
Probes
Litterature
PubMed38 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTINAGL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:35:09 CEST 2021
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