Atlas of Genetics and Cytogenetics in Oncology and Haematology

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TINAGL1 (tubulointerstitial nephritis antigen like 1)

Identity

Alias_namesLCN7
lipocalin 7
TINAG-like 1
Alias_symbol (synonym)P3ECSL
LIECG3
ARG1
TINAGRP
Other alias
HGNC (Hugo) TINAGL1
LocusID (NCBI) 64129
Atlas_Id 74709
Location 1p35.2  [Link to chromosome band 1p35]
Location_base_pair Starts at 31576485 and ends at 31587686 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)		OFD1 (Xp22.2) / TINAGL1 (1p35.2)TINAGL1 (1p35.2) / TACC2 (10q26.13)TINAGL1 (1p35.2) / TINAGL1 (1p35.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)TINAGL1   19168
Cards
Entrez_Gene (NCBI)TINAGL1  64129  tubulointerstitial nephritis antigen like 1
AliasesARG1; LCN7; LIECG3; TINAGRP
GeneCards (Weizmann)TINAGL1
Ensembl hg19 (Hinxton)ENSG00000142910 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000142910 [Gene_View]  chr1:31576485-31587686 [Contig_View]  TINAGL1 [Vega]
ICGC DataPortalENSG00000142910
TCGA cBioPortalTINAGL1
AceView (NCBI)TINAGL1
Genatlas (Paris)TINAGL1
WikiGenes64129
SOURCE (Princeton)TINAGL1
Genetics Home Reference (NIH)TINAGL1
Genomic and cartography
GoldenPath hg38 (UCSC)TINAGL1  -     chr1:31576485-31587686 +  1p35.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TINAGL1  -     1p35.2   [Description]    (hg19-Feb_2009)
EnsemblTINAGL1 - 1p35.2 [CytoView hg19]  TINAGL1 - 1p35.2 [CytoView hg38]
Mapping of homologs : NCBITINAGL1 [Mapview hg19]  TINAGL1 [Mapview hg38]
OMIM616064   
Gene and transcription
Genbank (Entrez)AB050716 AF205436 AF236150 AF289569 AK027839
RefSeq transcript (Entrez)NM_001204414 NM_001204415 NM_022164
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TINAGL1
Cluster EST : UnigeneHs.199368 [ NCBI ]
CGAP (NCI)Hs.199368
Alternative Splicing GalleryENSG00000142910
Gene ExpressionTINAGL1 [ NCBI-GEO ]   TINAGL1 [ EBI - ARRAY_EXPRESS ]   TINAGL1 [ SEEK ]   TINAGL1 [ MEM ]
Gene Expression Viewer (FireBrowse)TINAGL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64129
GTEX Portal (Tissue expression)TINAGL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9GZM7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9GZM7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9GZM7
Splice isoforms : SwissVarQ9GZM7
PhosPhoSitePlusQ9GZM7
Domaine pattern : Prosite (Expaxy)SMB_1 (PS00524)    SMB_2 (PS50958)    THIOL_PROTEASE_HIS (PS00639)   
Domains : Interpro (EBI)Pept_his_AS    Peptidase_C1A    Peptidase_C1A_C    Somatomedin_B_dom   
Domain families : Pfam (Sanger)Peptidase_C1 (PF00112)   
Domain families : Pfam (NCBI)pfam00112   
Domain families : Smart (EMBL)Pept_C1 (SM00645)  
Conserved Domain (NCBI)TINAGL1
DMDM Disease mutations64129
Blocks (Seattle)TINAGL1
SuperfamilyQ9GZM7
Human Protein AtlasENSG00000142910
Peptide AtlasQ9GZM7
HPRD07122
IPIIPI00005563   IPI00439435   IPI00910133   IPI00910913   IPI01013625   IPI00910801   IPI00979808   
Protein Interaction databases
DIP (DOE-UCLA)Q9GZM7
IntAct (EBI)Q9GZM7
FunCoupENSG00000142910
BioGRIDTINAGL1
STRING (EMBL)TINAGL1
ZODIACTINAGL1
Ontologies - Pathways
QuickGOQ9GZM7
Ontology : AmiGOcysteine-type endopeptidase activity  scavenger receptor activity  extracellular matrix structural constituent  protein binding  extracellular region  extracellular space  extracellular space  lysosome  receptor-mediated endocytosis  immune response  cell adhesion  endosomal transport  polysaccharide binding  extracellular matrix  extracellular matrix  laminin binding  proteolysis involved in cellular protein catabolic process  extracellular exosome  
Ontology : EGO-EBIcysteine-type endopeptidase activity  scavenger receptor activity  extracellular matrix structural constituent  protein binding  extracellular region  extracellular space  extracellular space  lysosome  receptor-mediated endocytosis  immune response  cell adhesion  endosomal transport  polysaccharide binding  extracellular matrix  extracellular matrix  laminin binding  proteolysis involved in cellular protein catabolic process  extracellular exosome  
NDEx NetworkTINAGL1
Atlas of Cancer Signalling NetworkTINAGL1
Wikipedia pathwaysTINAGL1
Orthology - Evolution
OrthoDB64129
GeneTree (enSembl)ENSG00000142910
Phylogenetic Trees/Animal Genes : TreeFamTINAGL1
HOVERGENQ9GZM7
HOGENOMQ9GZM7
Homologs : HomoloGeneTINAGL1
Homology/Alignments : Family Browser (UCSC)TINAGL1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTINAGL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TINAGL1
dbVarTINAGL1
ClinVarTINAGL1
1000_GenomesTINAGL1 
Exome Variant ServerTINAGL1
ExAC (Exome Aggregation Consortium)TINAGL1 (select the gene name)
Genetic variants : HAPMAP64129
Genomic Variants (DGV)TINAGL1 [DGVbeta]
DECIPHERTINAGL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTINAGL1 
Mutations
ICGC Data PortalTINAGL1 
TCGA Data PortalTINAGL1 
Broad Tumor PortalTINAGL1
OASIS PortalTINAGL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTINAGL1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTINAGL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TINAGL1
DgiDB (Drug Gene Interaction Database)TINAGL1
DoCM (Curated mutations)TINAGL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TINAGL1 (select a term)
intoGenTINAGL1
Cancer3DTINAGL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616064   
Orphanet
MedgenTINAGL1
Genetic Testing Registry TINAGL1
NextProtQ9GZM7 [Medical]
TSGene64129
GENETestsTINAGL1
Target ValidationTINAGL1
Huge Navigator TINAGL1 [HugePedia]
snp3D : Map Gene to Disease64129
BioCentury BCIQTINAGL1
ClinGenTINAGL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64129
Chemical/Pharm GKB GenePA38810
Clinical trialTINAGL1
Miscellaneous
canSAR (ICR)TINAGL1 (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTINAGL1
EVEXTINAGL1
GoPubMedTINAGL1
iHOPTINAGL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:41:29 CEST 2017
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