Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TINCR (tissue differentiation-inducing non-protein coding RNA)

Identity

Alias_namesPLAC2
placenta-specific 2
placenta-specific 2 (non-protein coding)
Alias_symbol (synonym)FLJ90734
NCRNA00036
LINC00036
onco-lncRNA-16
Other alias
HGNC (Hugo) TINCR
LocusID (NCBI) 257000
Atlas_Id 55658
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 5559353 and ends at 5567954 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TINCR   14607
Cards
Entrez_Gene (NCBI)TINCR  257000  tissue differentiation-inducing non-protein coding RNA
AliasesLINC00036; NCRNA00036; PLAC2; onco-lncRNA-16
GeneCards (Weizmann)TINCR
Ensembl hg19 (Hinxton)ENSG00000223573 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000223573 [Gene_View]  chr19:5559353-5567954 [Contig_View]  TINCR [Vega]
ICGC DataPortalENSG00000223573
TCGA cBioPortalTINCR
AceView (NCBI)TINCR
Genatlas (Paris)TINCR
WikiGenes257000
SOURCE (Princeton)TINCR
Genetics Home Reference (NIH)TINCR
Genomic and cartography
GoldenPath hg38 (UCSC)TINCR  -     chr19:5559353-5567954 -  19p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TINCR  -     19p13.3   [Description]    (hg19-Feb_2009)
EnsemblTINCR - 19p13.3 [CytoView hg19]  TINCR - 19p13.3 [CytoView hg38]
Mapping of homologs : NCBITINCR [Mapview hg19]  TINCR [Mapview hg38]
OMIM615241   
Gene and transcription
Genbank (Entrez)AK075215 BC036545 BC047562 BC120980 BC120981
RefSeq transcript (Entrez)NM_153375
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TINCR
Cluster EST : UnigeneHs.655392 [ NCBI ]
CGAP (NCI)Hs.655392
Alternative Splicing GalleryENSG00000223573
Gene ExpressionTINCR [ NCBI-GEO ]   TINCR [ EBI - ARRAY_EXPRESS ]   TINCR [ SEEK ]   TINCR [ MEM ]
Gene Expression Viewer (FireBrowse)TINCR [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)257000
GTEX Portal (Tissue expression)TINCR
Human Protein AtlasENSG00000223573-TINCR [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TINCR
DMDM Disease mutations257000
Blocks (Seattle)TINCR
Human Protein Atlas [tissue]ENSG00000223573-TINCR [tissue]
HPRD17859
IPIIPI00168331   IPI00015157   
Protein Interaction databases
FunCoupENSG00000223573
BioGRIDTINCR
STRING (EMBL)TINCR
ZODIACTINCR
Ontologies - Pathways
Huge Navigator TINCR [HugePedia]
snp3D : Map Gene to Disease257000
BioCentury BCIQTINCR
ClinGenTINCR
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD257000
Chemical/Pharm GKB GenePA33372
Clinical trialTINCR
Miscellaneous
canSAR (ICR)TINCR (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTINCR
EVEXTINCR
GoPubMedTINCR
iHOPTINCR
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 21:02:54 CET 2017

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