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TINF2 (TERF1 (TRF1)-interacting nuclear factor 2)

Identity

Other namesDKCA3
TIN2
HGNC (Hugo) TINF2
LocusID (NCBI) 26277
Location 14q12
Location_base_pair Starts at 24708851 and ends at 24711880 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)TINF2   11824
Cards
Entrez_Gene (NCBI)TINF2  26277  TERF1 (TRF1)-interacting nuclear factor 2
GeneCards (Weizmann)TINF2
Ensembl (Hinxton)ENSG00000092330 [Gene_View]  chr14:24708851-24711880 [Contig_View]  TINF2 [Vega]
AceView (NCBI)TINF2
Genatlas (Paris)TINF2
WikiGenes26277
SOURCE (Princeton)NM_001099274 NM_012461
Genomic and cartography
GoldenPath (UCSC)TINF2  -  14q12   chr14:24708851-24711880 -  14q12   [Description]    (hg19-Feb_2009)
EnsemblTINF2 - 14q12 [CytoView]
Mapping of homologs : NCBITINF2 [Mapview]
OMIM127550   268130   604319   613990   
Gene and transcription
Genbank (Entrez)AF195512 AK023166 AK225379 AK294119 AK315084
RefSeq transcript (Entrez)NM_001099274 NM_012461
RefSeq genomic (Entrez)AC_000146 NC_000014 NC_018925 NG_016650 NT_026437 NW_001838110 NW_004929393
Consensus coding sequences : CCDS (NCBI)TINF2
Cluster EST : UnigeneHs.496191 [ NCBI ]
CGAP (NCI)Hs.496191
Alternative Splicing : Fast-db (Paris)GSHG0009263
Alternative Splicing GalleryENSG00000092330
Gene ExpressionTINF2 [ NCBI-GEO ]     TINF2 [ SEEK ]   TINF2 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BSI4 (Uniprot)
NextProtQ9BSI4  [Medical]
With graphics : InterProQ9BSI4
Splice isoforms : SwissVarQ9BSI4 (Swissvar)
Related proteins : CluSTrQ9BSI4
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
DMDM Disease mutations26277
Blocks (Seattle)Q9BSI4
PDB (SRS)3BQO    3BU8   
PDB (PDBSum)3BQO    3BU8   
PDB (IMB)3BQO    3BU8   
PDB (RSDB)3BQO    3BU8   
Human Protein AtlasENSG00000092330
Peptide AtlasQ9BSI4
HPRD16056
IPIIPI00074109   IPI00218680   IPI00218681   IPI01010915   IPI01011406   
Protein Interaction databases
DIP (DOE-UCLA)Q9BSI4
IntAct (EBI)Q9BSI4
FunCoupENSG00000092330
BioGRIDTINF2
InParanoidQ9BSI4
Interologous Interaction database Q9BSI4
IntegromeDBTINF2
STRING (EMBL)TINF2
Ontologies - Pathways
Ontology : AmiGOtelomere maintenance  chromosome, telomeric region  nuclear telomere cap complex  DNA binding  protein binding  nucleoplasm  perinucleolar chromocenter  telomere maintenance via telomere lengthening  negative regulation of protein ADP-ribosylation  nuclear matrix  telomere assembly  positive regulation of telomere maintenance  negative regulation of telomere maintenance via telomerase  negative regulation of telomere maintenance via telomerase  protein localization to chromosome  protein localization to chromosome  telomeric DNA binding  negative regulation of epithelial cell proliferation  protein localization to chromosome, telomeric region  
Ontology : EGO-EBItelomere maintenance  chromosome, telomeric region  nuclear telomere cap complex  DNA binding  protein binding  nucleoplasm  perinucleolar chromocenter  telomere maintenance via telomere lengthening  negative regulation of protein ADP-ribosylation  nuclear matrix  telomere assembly  positive regulation of telomere maintenance  negative regulation of telomere maintenance via telomerase  negative regulation of telomere maintenance via telomerase  protein localization to chromosome  protein localization to chromosome  telomeric DNA binding  negative regulation of epithelial cell proliferation  protein localization to chromosome, telomeric region  
REACTOMETINF2
Protein Interaction DatabaseTINF2
Wikipedia pathwaysTINF2
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)TINF2
SNP (GeneSNP Utah)TINF2
SNP : HGBaseTINF2
Genetic variants : HAPMAPTINF2
1000_GenomesTINF2 
ICGC programENSG00000092330 
Somatic Mutations in Cancer : COSMICTINF2 
CONAN: Copy Number AnalysisTINF2 
Mutations and Diseases : HGMDTINF2
OMIM127550    268130    604319    613990   
GENETestsTINF2
Disease Genetic AssociationTINF2
Huge Navigator TINF2 [HugePedia]  TINF2 [HugeCancerGEM]
Genomic VariantsTINF2  TINF2 [DGVbeta]
Exome VariantTINF2
dbVarTINF2
ClinVarTINF2
snp3D : Map Gene to Disease26277
General knowledge
Homologs : HomoloGeneTINF2
Homology/Alignments : Family Browser (UCSC)TINF2
Phylogenetic Trees/Animal Genes : TreeFamTINF2
Chemical/Protein Interactions : CTD26277
Chemical/Pharm GKB GenePA36530
Clinical trialTINF2
Cancer Resource (Charite)ENSG00000092330
Other databases
Probes
Litterature
PubMed48 Pubmed reference(s) in Entrez
CoreMineTINF2
iHOPTINF2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Apr 18 16:52:22 CEST 2014

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