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TIPARP (TCDD inducible poly(ADP-ribose) polymerase)

Identity

Alias_namesTCDD-inducible poly(ADP-ribose) polymerase
Alias_symbol (synonym)DKFZP434J214
DKFZp686N0351
DDF1
PARP7
PARP-7
PARP-1
pART14
RM1
Other aliasARTD14
HGNC (Hugo) TIPARP
LocusID (NCBI) 25976
Atlas_Id 51750
Location 3q25.31  [Link to chromosome band 3q25]
Location_base_pair Starts at 156674926 and ends at 156706768 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TIPARP   23696
Cards
Entrez_Gene (NCBI)TIPARP  25976  TCDD inducible poly(ADP-ribose) polymerase
AliasesARTD14; PARP7; pART14
GeneCards (Weizmann)TIPARP
Ensembl hg19 (Hinxton)ENSG00000163659 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163659 [Gene_View]  chr3:156674926-156706768 [Contig_View]  TIPARP [Vega]
ICGC DataPortalENSG00000163659
TCGA cBioPortalTIPARP
AceView (NCBI)TIPARP
Genatlas (Paris)TIPARP
WikiGenes25976
SOURCE (Princeton)TIPARP
Genetics Home Reference (NIH)TIPARP
Genomic and cartography
GoldenPath hg38 (UCSC)TIPARP  -     chr3:156674926-156706768 +  3q25.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TIPARP  -     3q25.31   [Description]    (hg19-Feb_2009)
EnsemblTIPARP - 3q25.31 [CytoView hg19]  TIPARP - 3q25.31 [CytoView hg38]
Mapping of homologs : NCBITIPARP [Mapview hg19]  TIPARP [Mapview hg38]
OMIM612480   
Gene and transcription
Genbank (Entrez)AK097785 AK291261 AL080156 AM393433 BC034397
RefSeq transcript (Entrez)NM_001184717 NM_001184718 NM_015508
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TIPARP
Cluster EST : UnigeneHs.744050 [ NCBI ]
CGAP (NCI)Hs.744050
Alternative Splicing GalleryENSG00000163659
Gene ExpressionTIPARP [ NCBI-GEO ]   TIPARP [ EBI - ARRAY_EXPRESS ]   TIPARP [ SEEK ]   TIPARP [ MEM ]
Gene Expression Viewer (FireBrowse)TIPARP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)25976
GTEX Portal (Tissue expression)TIPARP
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z3E1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z3E1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z3E1
Splice isoforms : SwissVarQ7Z3E1
Catalytic activity : Enzyme2.4.2.30 [ Enzyme-Expasy ]   2.4.2.302.4.2.30 [ IntEnz-EBI ]   2.4.2.30 [ BRENDA ]   2.4.2.30 [ KEGG ]   
PhosPhoSitePlusQ7Z3E1
Domaine pattern : Prosite (Expaxy)PARP_CATALYTIC (PS51059)    WWE (PS50918)    ZF_C3H1 (PS50103)   
Domains : Interpro (EBI)Poly(ADP-ribose)pol_cat_dom    WWE-dom    Znf_CCCH   
Domain families : Pfam (Sanger)PARP (PF00644)   
Domain families : Pfam (NCBI)pfam00644   
Conserved Domain (NCBI)TIPARP
DMDM Disease mutations25976
Blocks (Seattle)TIPARP
SuperfamilyQ7Z3E1
Human Protein AtlasENSG00000163659
Peptide AtlasQ7Z3E1
HPRD18192
IPIIPI00384981   IPI00797628   IPI00796645   IPI00796110   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z3E1
IntAct (EBI)Q7Z3E1
FunCoupENSG00000163659
BioGRIDTIPARP
STRING (EMBL)TIPARP
ZODIACTIPARP
Ontologies - Pathways
QuickGOQ7Z3E1
Ontology : AmiGOvasculogenesis  kidney development  NAD+ ADP-ribosyltransferase activity  nucleus  protein ADP-ribosylation  androgen metabolic process  estrogen metabolic process  female gonad development  post-embryonic development  negative regulation of gene expression  hemopoiesis  enhancer binding  multicellular organism metabolic process  positive regulation of protein catabolic process  metal ion binding  platelet-derived growth factor receptor signaling pathway  skeletal system morphogenesis  smooth muscle tissue development  palate development  face morphogenesis  cellular response to organic cyclic compound  
Ontology : EGO-EBIvasculogenesis  kidney development  NAD+ ADP-ribosyltransferase activity  nucleus  protein ADP-ribosylation  androgen metabolic process  estrogen metabolic process  female gonad development  post-embryonic development  negative regulation of gene expression  hemopoiesis  enhancer binding  multicellular organism metabolic process  positive regulation of protein catabolic process  metal ion binding  platelet-derived growth factor receptor signaling pathway  skeletal system morphogenesis  smooth muscle tissue development  palate development  face morphogenesis  cellular response to organic cyclic compound  
NDEx NetworkTIPARP
Atlas of Cancer Signalling NetworkTIPARP
Wikipedia pathwaysTIPARP
Orthology - Evolution
OrthoDB25976
GeneTree (enSembl)ENSG00000163659
Phylogenetic Trees/Animal Genes : TreeFamTIPARP
HOVERGENQ7Z3E1
HOGENOMQ7Z3E1
Homologs : HomoloGeneTIPARP
Homology/Alignments : Family Browser (UCSC)TIPARP
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTIPARP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TIPARP
dbVarTIPARP
ClinVarTIPARP
1000_GenomesTIPARP 
Exome Variant ServerTIPARP
ExAC (Exome Aggregation Consortium)TIPARP (select the gene name)
Genetic variants : HAPMAP25976
Genomic Variants (DGV)TIPARP [DGVbeta]
DECIPHERTIPARP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTIPARP 
Mutations
ICGC Data PortalTIPARP 
TCGA Data PortalTIPARP 
Broad Tumor PortalTIPARP
OASIS PortalTIPARP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTIPARP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTIPARP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TIPARP
DgiDB (Drug Gene Interaction Database)TIPARP
DoCM (Curated mutations)TIPARP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TIPARP (select a term)
intoGenTIPARP
Cancer3DTIPARP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612480   
Orphanet
MedgenTIPARP
Genetic Testing Registry TIPARP
NextProtQ7Z3E1 [Medical]
TSGene25976
GENETestsTIPARP
Target ValidationTIPARP
Huge Navigator TIPARP [HugePedia]
snp3D : Map Gene to Disease25976
BioCentury BCIQTIPARP
ClinGenTIPARP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD25976
Chemical/Pharm GKB GenePA134885396
Clinical trialTIPARP
Miscellaneous
canSAR (ICR)TIPARP (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTIPARP
EVEXTIPARP
GoPubMedTIPARP
iHOPTIPARP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Sep 25 19:35:06 CEST 2017

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