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TIPIN (TIMELESS interacting protein)

Identity

Alias_symbol (synonym)FLJ20516
Other alias-
HGNC (Hugo) TIPIN
LocusID (NCBI) 54962
Atlas_Id 55466
Location 15q22.31  [Link to chromosome band 15q22]
Location_base_pair Starts at 66336670 and ends at 66356716 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PLA2G1B (12q24.31) / TIPIN (15q22.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TIPIN   30750
Cards
Entrez_Gene (NCBI)TIPIN  54962  TIMELESS interacting protein
Aliases
GeneCards (Weizmann)TIPIN
Ensembl hg19 (Hinxton)ENSG00000075131 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000075131 [Gene_View]  chr15:66336670-66356716 [Contig_View]  TIPIN [Vega]
ICGC DataPortalENSG00000075131
TCGA cBioPortalTIPIN
AceView (NCBI)TIPIN
Genatlas (Paris)TIPIN
WikiGenes54962
SOURCE (Princeton)TIPIN
Genetics Home Reference (NIH)TIPIN
Genomic and cartography
GoldenPath hg38 (UCSC)TIPIN  -     chr15:66336670-66356716 -  15q22.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TIPIN  -     15q22.31   [Description]    (hg19-Feb_2009)
EnsemblTIPIN - 15q22.31 [CytoView hg19]  TIPIN - 15q22.31 [CytoView hg38]
Mapping of homologs : NCBITIPIN [Mapview hg19]  TIPIN [Mapview hg38]
OMIM610716   
Gene and transcription
Genbank (Entrez)AK000523 AK299233 BC000870 BK001386 BU596053
RefSeq transcript (Entrez)NM_001289986 NM_017858
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TIPIN
Cluster EST : UnigeneHs.744308 [ NCBI ]
CGAP (NCI)Hs.744308
Alternative Splicing GalleryENSG00000075131
Gene ExpressionTIPIN [ NCBI-GEO ]   TIPIN [ EBI - ARRAY_EXPRESS ]   TIPIN [ SEEK ]   TIPIN [ MEM ]
Gene Expression Viewer (FireBrowse)TIPIN [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54962
GTEX Portal (Tissue expression)TIPIN
Human Protein AtlasENSG00000075131-TIPIN [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BVW5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BVW5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BVW5
Splice isoforms : SwissVarQ9BVW5
PhosPhoSitePlusQ9BVW5
Domains : Interpro (EBI)Csm3   
Domain families : Pfam (Sanger)Swi3 (PF07962)   
Domain families : Pfam (NCBI)pfam07962   
Domain structure : Prodom (Prabi Lyon)Swi3 (PD089639)   
Conserved Domain (NCBI)TIPIN
DMDM Disease mutations54962
Blocks (Seattle)TIPIN
SuperfamilyQ9BVW5
Human Protein Atlas [tissue]ENSG00000075131-TIPIN [tissue]
Peptide AtlasQ9BVW5
HPRD16917
IPIIPI00306452   IPI00788783   
Protein Interaction databases
DIP (DOE-UCLA)Q9BVW5
IntAct (EBI)Q9BVW5
FunCoupENSG00000075131
BioGRIDTIPIN
STRING (EMBL)TIPIN
ZODIACTIPIN
Ontologies - Pathways
QuickGOQ9BVW5
Ontology : AmiGODNA replication checkpoint  nuclear chromatin  DNA binding  protein binding  nucleus  nucleoplasm  cytoplasm  DNA replication  positive regulation of cell proliferation  replication fork protection complex  intra-S DNA damage checkpoint  regulation of nuclear cell cycle DNA replication  replication fork arrest  intracellular membrane-bounded organelle  cell cycle phase transition  replication fork protection  cell division  
Ontology : EGO-EBIDNA replication checkpoint  nuclear chromatin  DNA binding  protein binding  nucleus  nucleoplasm  cytoplasm  DNA replication  positive regulation of cell proliferation  replication fork protection complex  intra-S DNA damage checkpoint  regulation of nuclear cell cycle DNA replication  replication fork arrest  intracellular membrane-bounded organelle  cell cycle phase transition  replication fork protection  cell division  
NDEx NetworkTIPIN
Atlas of Cancer Signalling NetworkTIPIN
Wikipedia pathwaysTIPIN
Orthology - Evolution
OrthoDB54962
GeneTree (enSembl)ENSG00000075131
Phylogenetic Trees/Animal Genes : TreeFamTIPIN
HOVERGENQ9BVW5
HOGENOMQ9BVW5
Homologs : HomoloGeneTIPIN
Homology/Alignments : Family Browser (UCSC)TIPIN
Gene fusions - Rearrangements
Tumor Fusion PortalTIPIN
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTIPIN [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TIPIN
dbVarTIPIN
ClinVarTIPIN
1000_GenomesTIPIN 
Exome Variant ServerTIPIN
ExAC (Exome Aggregation Consortium)ENSG00000075131
GNOMAD BrowserENSG00000075131
Genetic variants : HAPMAP54962
Genomic Variants (DGV)TIPIN [DGVbeta]
DECIPHERTIPIN [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTIPIN 
Mutations
ICGC Data PortalTIPIN 
TCGA Data PortalTIPIN 
Broad Tumor PortalTIPIN
OASIS PortalTIPIN [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTIPIN  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTIPIN
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TIPIN
DgiDB (Drug Gene Interaction Database)TIPIN
DoCM (Curated mutations)TIPIN (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TIPIN (select a term)
intoGenTIPIN
Cancer3DTIPIN(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610716   
Orphanet
DisGeNETTIPIN
MedgenTIPIN
Genetic Testing Registry TIPIN
NextProtQ9BVW5 [Medical]
TSGene54962
GENETestsTIPIN
Target ValidationTIPIN
Huge Navigator TIPIN [HugePedia]
snp3D : Map Gene to Disease54962
BioCentury BCIQTIPIN
ClinGenTIPIN
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54962
Chemical/Pharm GKB GenePA147357269
Clinical trialTIPIN
Miscellaneous
canSAR (ICR)TIPIN (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTIPIN
EVEXTIPIN
GoPubMedTIPIN
iHOPTIPIN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:38:31 CET 2017

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