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TIPRL (TOR signaling pathway regulator)

Identity

Alias_namesTIP41
Alias_symbol (synonym)MGC3794
dJ69E11.3
TIP41
TIPRL1
Other aliasTIP
HGNC (Hugo) TIPRL
LocusID (NCBI) 261726
Atlas_Id 53169
Location 1q24.2  [Link to chromosome band 1q24]
Location_base_pair Starts at 168148083 and ends at 168161633 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
TIPRL (1q24.2) / CCL22 (16q13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TIPRL   30231
Cards
Entrez_Gene (NCBI)TIPRL  261726  TOR signaling pathway regulator
AliasesTIP; TIP41
GeneCards (Weizmann)TIPRL
Ensembl hg19 (Hinxton)ENSG00000143155 [Gene_View]  chr1:168148083-168161633 [Contig_View]  TIPRL [Vega]
Ensembl hg38 (Hinxton)ENSG00000143155 [Gene_View]  chr1:168148083-168161633 [Contig_View]  TIPRL [Vega]
ICGC DataPortalENSG00000143155
TCGA cBioPortalTIPRL
AceView (NCBI)TIPRL
Genatlas (Paris)TIPRL
WikiGenes261726
SOURCE (Princeton)TIPRL
Genetics Home Reference (NIH)TIPRL
Genomic and cartography
GoldenPath hg19 (UCSC)TIPRL  -     chr1:168148083-168161633 +  1q24.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TIPRL  -     1q24.2   [Description]    (hg38-Dec_2013)
EnsemblTIPRL - 1q24.2 [CytoView hg19]  TIPRL - 1q24.2 [CytoView hg38]
Mapping of homologs : NCBITIPRL [Mapview hg19]  TIPRL [Mapview hg38]
OMIM611807   
Gene and transcription
Genbank (Entrez)AB097034 AI167356 AK313520 AL049670 BC009506
RefSeq transcript (Entrez)NM_001031800 NM_152902
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_004487 NW_004929293
Consensus coding sequences : CCDS (NCBI)TIPRL
Cluster EST : UnigeneHs.209431 [ NCBI ]
CGAP (NCI)Hs.209431
Alternative Splicing GalleryENSG00000143155
Gene ExpressionTIPRL [ NCBI-GEO ]   TIPRL [ EBI - ARRAY_EXPRESS ]   TIPRL [ SEEK ]   TIPRL [ MEM ]
Gene Expression Viewer (FireBrowse)TIPRL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)261726
GTEX Portal (Tissue expression)TIPRL
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75663   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75663  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75663
Splice isoforms : SwissVarO75663
PhosPhoSitePlusO75663
Domains : Interpro (EBI)TIP41-like   
Domain families : Pfam (Sanger)TIP41 (PF04176)   
Domain families : Pfam (NCBI)pfam04176   
Conserved Domain (NCBI)TIPRL
DMDM Disease mutations261726
Blocks (Seattle)TIPRL
SuperfamilyO75663
Human Protein AtlasENSG00000143155
Peptide AtlasO75663
HPRD14608
IPIIPI00745568   IPI00641815   
Protein Interaction databases
DIP (DOE-UCLA)O75663
IntAct (EBI)O75663
FunCoupENSG00000143155
BioGRIDTIPRL
STRING (EMBL)TIPRL
ZODIACTIPRL
Ontologies - Pathways
QuickGOO75663
Ontology : AmiGODNA damage checkpoint  protein binding  cytoplasm  negative regulation of protein phosphatase type 2A activity  intracellular membrane-bounded organelle  
Ontology : EGO-EBIDNA damage checkpoint  protein binding  cytoplasm  negative regulation of protein phosphatase type 2A activity  intracellular membrane-bounded organelle  
NDEx NetworkTIPRL
Atlas of Cancer Signalling NetworkTIPRL
Wikipedia pathwaysTIPRL
Orthology - Evolution
OrthoDB261726
GeneTree (enSembl)ENSG00000143155
Phylogenetic Trees/Animal Genes : TreeFamTIPRL
HOVERGENO75663
HOGENOMO75663
Homologs : HomoloGeneTIPRL
Homology/Alignments : Family Browser (UCSC)TIPRL
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTIPRL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TIPRL
dbVarTIPRL
ClinVarTIPRL
1000_GenomesTIPRL 
Exome Variant ServerTIPRL
ExAC (Exome Aggregation Consortium)TIPRL (select the gene name)
Genetic variants : HAPMAP261726
Genomic Variants (DGV)TIPRL [DGVbeta]
DECIPHER (Syndromes)1:168148083-168161633  ENSG00000143155
CONAN: Copy Number AnalysisTIPRL 
Mutations
ICGC Data PortalTIPRL 
TCGA Data PortalTIPRL 
Broad Tumor PortalTIPRL
OASIS PortalTIPRL [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTIPRL  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTIPRL
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TIPRL
DgiDB (Drug Gene Interaction Database)TIPRL
DoCM (Curated mutations)TIPRL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TIPRL (select a term)
intoGenTIPRL
Cancer3DTIPRL(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611807   
Orphanet
MedgenTIPRL
Genetic Testing Registry TIPRL
NextProtO75663 [Medical]
TSGene261726
GENETestsTIPRL
Huge Navigator TIPRL [HugePedia]
snp3D : Map Gene to Disease261726
BioCentury BCIQTIPRL
ClinGenTIPRL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD261726
Chemical/Pharm GKB GenePA142670811
Clinical trialTIPRL
Miscellaneous
canSAR (ICR)TIPRL (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTIPRL
EVEXTIPRL
GoPubMedTIPRL
iHOPTIPRL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:22:30 CEST 2017

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