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TKTL2 (transketolase like 2)

Identity

Alias_symbol (synonym)FLJ32975
DKFZP434L1717
Other alias-
HGNC (Hugo) TKTL2
LocusID (NCBI) 84076
Atlas_Id 74716
Location 4q32.2  [Link to chromosome band 4q32]
Location_base_pair Starts at 163471095 and ends at 163473895 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TKTL2   25313
Cards
Entrez_Gene (NCBI)TKTL2  84076  transketolase like 2
Aliases
GeneCards (Weizmann)TKTL2
Ensembl hg19 (Hinxton)ENSG00000151005 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000151005 [Gene_View]  chr4:163471095-163473895 [Contig_View]  TKTL2 [Vega]
ICGC DataPortalENSG00000151005
TCGA cBioPortalTKTL2
AceView (NCBI)TKTL2
Genatlas (Paris)TKTL2
WikiGenes84076
SOURCE (Princeton)TKTL2
Genetics Home Reference (NIH)TKTL2
Genomic and cartography
GoldenPath hg38 (UCSC)TKTL2  -     chr4:163471095-163473895 -  4q32.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TKTL2  -     4q32.2   [Description]    (hg19-Feb_2009)
EnsemblTKTL2 - 4q32.2 [CytoView hg19]  TKTL2 - 4q32.2 [CytoView hg38]
Mapping of homologs : NCBITKTL2 [Mapview hg19]  TKTL2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK057325 AK057537 AK098582 AK314517 AL136779
RefSeq transcript (Entrez)NM_032136
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TKTL2
Cluster EST : UnigeneHs.303923 [ NCBI ]
CGAP (NCI)Hs.303923
Alternative Splicing GalleryENSG00000151005
Gene ExpressionTKTL2 [ NCBI-GEO ]   TKTL2 [ EBI - ARRAY_EXPRESS ]   TKTL2 [ SEEK ]   TKTL2 [ MEM ]
Gene Expression Viewer (FireBrowse)TKTL2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84076
GTEX Portal (Tissue expression)TKTL2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H0I9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H0I9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H0I9
Splice isoforms : SwissVarQ9H0I9
PhosPhoSitePlusQ9H0I9
Domains : Interpro (EBI)THDP-binding    Transketo_C/PFOR_II    Transketolase-like_Pyr-bd    Transketolase_C    Transketolase_N   
Domain families : Pfam (Sanger)Transket_pyr (PF02779)    Transketolase_C (PF02780)    Transketolase_N (PF00456)   
Domain families : Pfam (NCBI)pfam02779    pfam02780    pfam00456   
Domain families : Smart (EMBL)Transket_pyr (SM00861)  
Conserved Domain (NCBI)TKTL2
DMDM Disease mutations84076
Blocks (Seattle)TKTL2
SuperfamilyQ9H0I9
Human Protein AtlasENSG00000151005
Peptide AtlasQ9H0I9
HPRD13159
IPIIPI00549825   
Protein Interaction databases
DIP (DOE-UCLA)Q9H0I9
IntAct (EBI)Q9H0I9
FunCoupENSG00000151005
BioGRIDTKTL2
STRING (EMBL)TKTL2
ZODIACTKTL2
Ontologies - Pathways
QuickGOQ9H0I9
Ontology : AmiGOtransketolase activity  cytoplasm  metabolic process  metal ion binding  
Ontology : EGO-EBItransketolase activity  cytoplasm  metabolic process  metal ion binding  
Pathways : KEGGPentose phosphate pathway   
NDEx NetworkTKTL2
Atlas of Cancer Signalling NetworkTKTL2
Wikipedia pathwaysTKTL2
Orthology - Evolution
OrthoDB84076
GeneTree (enSembl)ENSG00000151005
Phylogenetic Trees/Animal Genes : TreeFamTKTL2
HOVERGENQ9H0I9
HOGENOMQ9H0I9
Homologs : HomoloGeneTKTL2
Homology/Alignments : Family Browser (UCSC)TKTL2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTKTL2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TKTL2
dbVarTKTL2
ClinVarTKTL2
1000_GenomesTKTL2 
Exome Variant ServerTKTL2
ExAC (Exome Aggregation Consortium)TKTL2 (select the gene name)
Genetic variants : HAPMAP84076
Genomic Variants (DGV)TKTL2 [DGVbeta]
DECIPHERTKTL2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTKTL2 
Mutations
ICGC Data PortalTKTL2 
TCGA Data PortalTKTL2 
Broad Tumor PortalTKTL2
OASIS PortalTKTL2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTKTL2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTKTL2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TKTL2
DgiDB (Drug Gene Interaction Database)TKTL2
DoCM (Curated mutations)TKTL2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TKTL2 (select a term)
intoGenTKTL2
Cancer3DTKTL2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTKTL2
Genetic Testing Registry TKTL2
NextProtQ9H0I9 [Medical]
TSGene84076
GENETestsTKTL2
Target ValidationTKTL2
Huge Navigator TKTL2 [HugePedia]
snp3D : Map Gene to Disease84076
BioCentury BCIQTKTL2
ClinGenTKTL2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84076
Chemical/Pharm GKB GenePA142670806
Clinical trialTKTL2
Miscellaneous
canSAR (ICR)TKTL2 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTKTL2
EVEXTKTL2
GoPubMedTKTL2
iHOPTKTL2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:41:29 CEST 2017

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