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TLCD1 (TLC domain containing 1)

Identity

Other alias-
HGNC (Hugo) TLCD1
LocusID (NCBI) 116238
Atlas_Id 74717
Location 17q11.2  [Link to chromosome band 17q11]
Location_base_pair Starts at 28724348 and ends at 28726931 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TLCD1 (17q11.2) / NEK8 (17q11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TLCD1   25177
Cards
Entrez_Gene (NCBI)TLCD1  116238  TLC domain containing 1
Aliases
GeneCards (Weizmann)TLCD1
Ensembl hg19 (Hinxton)ENSG00000160606 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000160606 [Gene_View]  chr17:28724348-28726931 [Contig_View]  TLCD1 [Vega]
ICGC DataPortalENSG00000160606
TCGA cBioPortalTLCD1
AceView (NCBI)TLCD1
Genatlas (Paris)TLCD1
WikiGenes116238
SOURCE (Princeton)TLCD1
Genetics Home Reference (NIH)TLCD1
Genomic and cartography
GoldenPath hg38 (UCSC)TLCD1  -     chr17:28724348-28726931 -  17q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TLCD1  -     17q11.2   [Description]    (hg19-Feb_2009)
EnsemblTLCD1 - 17q11.2 [CytoView hg19]  TLCD1 - 17q11.2 [CytoView hg38]
Mapping of homologs : NCBITLCD1 [Mapview hg19]  TLCD1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC014072 BF478215 BX106421 CA453962 EU831756
RefSeq transcript (Entrez)NM_001160407 NM_138463
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TLCD1
Cluster EST : UnigeneHs.499952 [ NCBI ]
CGAP (NCI)Hs.499952
Alternative Splicing GalleryENSG00000160606
Gene ExpressionTLCD1 [ NCBI-GEO ]   TLCD1 [ EBI - ARRAY_EXPRESS ]   TLCD1 [ SEEK ]   TLCD1 [ MEM ]
Gene Expression Viewer (FireBrowse)TLCD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)116238
GTEX Portal (Tissue expression)TLCD1
Human Protein AtlasENSG00000160606-TLCD1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96CP7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96CP7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96CP7
Splice isoforms : SwissVarQ96CP7
PhosPhoSitePlusQ96CP7
Domaine pattern : Prosite (Expaxy)TLC (PS50922)   
Domains : Interpro (EBI)TLC-dom   
Domain families : Pfam (Sanger)TRAM_LAG1_CLN8 (PF03798)   
Domain families : Pfam (NCBI)pfam03798   
Domain families : Smart (EMBL)TLC (SM00724)  
Conserved Domain (NCBI)TLCD1
DMDM Disease mutations116238
Blocks (Seattle)TLCD1
SuperfamilyQ96CP7
Human Protein Atlas [tissue]ENSG00000160606-TLCD1 [tissue]
Peptide AtlasQ96CP7
HPRD14015
IPIIPI00060523   IPI00793753   
Protein Interaction databases
DIP (DOE-UCLA)Q96CP7
IntAct (EBI)Q96CP7
FunCoupENSG00000160606
BioGRIDTLCD1
STRING (EMBL)TLCD1
ZODIACTLCD1
Ontologies - Pathways
QuickGOQ96CP7
Ontology : AmiGOplasma membrane  integral component of membrane  
Ontology : EGO-EBIplasma membrane  integral component of membrane  
NDEx NetworkTLCD1
Atlas of Cancer Signalling NetworkTLCD1
Wikipedia pathwaysTLCD1
Orthology - Evolution
OrthoDB116238
GeneTree (enSembl)ENSG00000160606
Phylogenetic Trees/Animal Genes : TreeFamTLCD1
HOVERGENQ96CP7
HOGENOMQ96CP7
Homologs : HomoloGeneTLCD1
Homology/Alignments : Family Browser (UCSC)TLCD1
Gene fusions - Rearrangements
Fusion: Tumor Portal TLCD1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTLCD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TLCD1
dbVarTLCD1
ClinVarTLCD1
1000_GenomesTLCD1 
Exome Variant ServerTLCD1
ExAC (Exome Aggregation Consortium)ENSG00000160606
GNOMAD BrowserENSG00000160606
Genetic variants : HAPMAP116238
Genomic Variants (DGV)TLCD1 [DGVbeta]
DECIPHERTLCD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTLCD1 
Mutations
ICGC Data PortalTLCD1 
TCGA Data PortalTLCD1 
Broad Tumor PortalTLCD1
OASIS PortalTLCD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTLCD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTLCD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TLCD1
DgiDB (Drug Gene Interaction Database)TLCD1
DoCM (Curated mutations)TLCD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TLCD1 (select a term)
intoGenTLCD1
Cancer3DTLCD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTLCD1
Genetic Testing Registry TLCD1
NextProtQ96CP7 [Medical]
TSGene116238
GENETestsTLCD1
Target ValidationTLCD1
Huge Navigator TLCD1 [HugePedia]
snp3D : Map Gene to Disease116238
BioCentury BCIQTLCD1
ClinGenTLCD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD116238
Chemical/Pharm GKB GenePA142670807
Clinical trialTLCD1
Miscellaneous
canSAR (ICR)TLCD1 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTLCD1
EVEXTLCD1
GoPubMedTLCD1
iHOPTLCD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:32:27 CET 2017

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