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TLCD1 (TLC domain containing 1)

Identity

Alias (NCBI)-
HGNC (Hugo) TLCD1
HGNC Alias namecalfacilitin
LocusID (NCBI) 116238
Atlas_Id 74717
Location 17q11.2  [Link to chromosome band 17q11]
Location_base_pair Starts at 28724348 and ends at 28726233 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TLCD1 (17q11.2) / NEK8 (17q11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TLCD1   25177
Cards
Entrez_Gene (NCBI)TLCD1    TLC domain containing 1
Aliases
GeneCards (Weizmann)TLCD1
Ensembl hg19 (Hinxton)ENSG00000160606 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000160606 [Gene_View]  ENSG00000160606 [Sequence]  chr17:28724348-28726233 [Contig_View]  TLCD1 [Vega]
ICGC DataPortalENSG00000160606
TCGA cBioPortalTLCD1
AceView (NCBI)TLCD1
Genatlas (Paris)TLCD1
SOURCE (Princeton)TLCD1
Genetics Home Reference (NIH)TLCD1
Genomic and cartography
GoldenPath hg38 (UCSC)TLCD1  -     chr17:28724348-28726233 -  17q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TLCD1  -     17q11.2   [Description]    (hg19-Feb_2009)
GoldenPathTLCD1 - 17q11.2 [CytoView hg19]  TLCD1 - 17q11.2 [CytoView hg38]
ImmunoBaseENSG00000160606
Genome Data Viewer NCBITLCD1 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)BC014072 BF478215 BX106421 CA453962
RefSeq transcript (Entrez)NM_001160407 NM_138463
Consensus coding sequences : CCDS (NCBI)TLCD1
Gene ExpressionTLCD1 [ NCBI-GEO ]   TLCD1 [ EBI - ARRAY_EXPRESS ]   TLCD1 [ SEEK ]   TLCD1 [ MEM ]
Gene Expression Viewer (FireBrowse)TLCD1 [ Firebrowse - Broad ]
GenevisibleExpression of TLCD1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)116238
GTEX Portal (Tissue expression)TLCD1
Human Protein AtlasENSG00000160606-TLCD1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96CP7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96CP7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96CP7
PhosPhoSitePlusQ96CP7
Domaine pattern : Prosite (Expaxy)TLC (PS50922)   
Domains : Interpro (EBI)TLC-dom   
Domain families : Pfam (Sanger)TRAM_LAG1_CLN8 (PF03798)   
Domain families : Pfam (NCBI)pfam03798   
Domain families : Smart (EMBL)TLC (SM00724)  
Conserved Domain (NCBI)TLCD1
SuperfamilyQ96CP7
AlphaFold pdb e-kbQ96CP7   
Human Protein Atlas [tissue]ENSG00000160606-TLCD1 [tissue]
HPRD14015
Protein Interaction databases
DIP (DOE-UCLA)Q96CP7
IntAct (EBI)Q96CP7
BioGRIDTLCD1
STRING (EMBL)TLCD1
ZODIACTLCD1
Ontologies - Pathways
QuickGOQ96CP7
Ontology : AmiGOprotein binding  plasma membrane  plasma membrane  plasma membrane organization  plasma membrane organization  integral component of membrane  lipid homeostasis  phospholipid homeostasis  phospholipid homeostasis  membrane assembly  membrane assembly  regulation of membrane lipid distribution  regulation of membrane lipid distribution  
Ontology : EGO-EBIprotein binding  plasma membrane  plasma membrane  plasma membrane organization  plasma membrane organization  integral component of membrane  lipid homeostasis  phospholipid homeostasis  phospholipid homeostasis  membrane assembly  membrane assembly  regulation of membrane lipid distribution  regulation of membrane lipid distribution  
NDEx NetworkTLCD1
Atlas of Cancer Signalling NetworkTLCD1
Wikipedia pathwaysTLCD1
Orthology - Evolution
OrthoDB116238
GeneTree (enSembl)ENSG00000160606
Phylogenetic Trees/Animal Genes : TreeFamTLCD1
Homologs : HomoloGeneTLCD1
Homology/Alignments : Family Browser (UCSC)TLCD1
Gene fusions - Rearrangements
Fusion : QuiverTLCD1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTLCD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TLCD1
dbVarTLCD1
ClinVarTLCD1
MonarchTLCD1
1000_GenomesTLCD1 
Exome Variant ServerTLCD1
GNOMAD BrowserENSG00000160606
Varsome BrowserTLCD1
ACMGTLCD1 variants
VarityQ96CP7
Genomic Variants (DGV)TLCD1 [DGVbeta]
DECIPHERTLCD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTLCD1 
Mutations
ICGC Data PortalTLCD1 
TCGA Data PortalTLCD1 
Broad Tumor PortalTLCD1
OASIS PortalTLCD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTLCD1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTLCD1
Mutations and Diseases : HGMDTLCD1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTLCD1
DgiDB (Drug Gene Interaction Database)TLCD1
DoCM (Curated mutations)TLCD1
CIViC (Clinical Interpretations of Variants in Cancer)TLCD1
Cancer3DTLCD1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTLCD1
MedgenTLCD1
Genetic Testing Registry TLCD1
NextProtQ96CP7 [Medical]
GENETestsTLCD1
Target ValidationTLCD1
Huge Navigator TLCD1 [HugePedia]
ClinGenTLCD1
Clinical trials, drugs, therapy
MyCancerGenomeTLCD1
Protein Interactions : CTDTLCD1
Pharm GKB GenePA142670807
PharosQ96CP7
Clinical trialTLCD1
Miscellaneous
canSAR (ICR)TLCD1
HarmonizomeTLCD1
DataMed IndexTLCD1
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTLCD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 16:25:34 CEST 2021

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