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TLCD3B (TLC domain containing 3B)

Identity

Alias (NCBI)FAM57B
FP1188
HGNC (Hugo) TLCD3B
HGNC Alias symbDKFZP434I2117
HGNC Previous namefamily with sequence similarity 57, member B
LocusID (NCBI) 83723
Atlas_Id 63212
Location 16p11.2  [Link to chromosome band 16p11]
Location_base_pair Starts at 30024427 and ends at 30031271 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



External links

 

Nomenclature
HGNC (Hugo)TLCD3B   25295
Cards
Entrez_Gene (NCBI)TLCD3B    TLC domain containing 3B
AliasesFAM57B; FP1188
GeneCards (Weizmann)TLCD3B
Ensembl hg19 (Hinxton)ENSG00000149926 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000149926 [Gene_View]  ENSG00000149926 [Sequence]  chr16:30024427-30031271 [Contig_View]  TLCD3B [Vega]
ICGC DataPortalENSG00000149926
TCGA cBioPortalTLCD3B
AceView (NCBI)TLCD3B
Genatlas (Paris)TLCD3B
SOURCE (Princeton)TLCD3B
Genetics Home Reference (NIH)TLCD3B
Genomic and cartography
GoldenPath hg38 (UCSC)TLCD3B  -     chr16:30024427-30031271 -  16p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TLCD3B  -     16p11.2   [Description]    (hg19-Feb_2009)
GoldenPathTLCD3B - 16p11.2 [CytoView hg19]  TLCD3B - 16p11.2 [CytoView hg38]
ImmunoBaseENSG00000149926
Genome Data Viewer NCBITLCD3B [Mapview hg19]  
OMIM615175   
Gene and transcription
Genbank (Entrez)AB593089 AB593090 AF370365 AK097527 AL136777
RefSeq transcript (Entrez)NM_001318504 NM_001352173 NM_031478
Consensus coding sequences : CCDS (NCBI)TLCD3B
Gene ExpressionTLCD3B [ NCBI-GEO ]   TLCD3B [ EBI - ARRAY_EXPRESS ]   TLCD3B [ SEEK ]   TLCD3B [ MEM ]
Gene Expression Viewer (FireBrowse)TLCD3B [ Firebrowse - Broad ]
GenevisibleExpression of TLCD3B in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83723
GTEX Portal (Tissue expression)TLCD3B
Human Protein AtlasENSG00000149926-TLCD3B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ71RH2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ71RH2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ71RH2
PhosPhoSitePlusQ71RH2
Domaine pattern : Prosite (Expaxy)TLC (PS50922)   
Domains : Interpro (EBI)TLC-dom   
Domain families : Pfam (Sanger)TRAM_LAG1_CLN8 (PF03798)   
Domain families : Pfam (NCBI)pfam03798   
Domain families : Smart (EMBL)TLC (SM00724)  
Conserved Domain (NCBI)TLCD3B
SuperfamilyQ71RH2
AlphaFold pdb e-kbQ71RH2   
Human Protein Atlas [tissue]ENSG00000149926-TLCD3B [tissue]
HPRD13156
Protein Interaction databases
DIP (DOE-UCLA)Q71RH2
IntAct (EBI)Q71RH2
BioGRIDTLCD3B
STRING (EMBL)TLCD3B
ZODIACTLCD3B
Ontologies - Pathways
QuickGOQ71RH2
Ontology : AmiGOGolgi membrane  endoplasmic reticulum  endoplasmic reticulum  endoplasmic reticulum membrane  integral component of membrane  negative regulation of fat cell differentiation  ceramide biosynthetic process  sphingosine N-acyltransferase activity  lipid homeostasis  
Ontology : EGO-EBIGolgi membrane  endoplasmic reticulum  endoplasmic reticulum  endoplasmic reticulum membrane  integral component of membrane  negative regulation of fat cell differentiation  ceramide biosynthetic process  sphingosine N-acyltransferase activity  lipid homeostasis  
NDEx NetworkTLCD3B
Atlas of Cancer Signalling NetworkTLCD3B
Wikipedia pathwaysTLCD3B
Orthology - Evolution
OrthoDB83723
GeneTree (enSembl)ENSG00000149926
Phylogenetic Trees/Animal Genes : TreeFamTLCD3B
Homologs : HomoloGeneTLCD3B
Homology/Alignments : Family Browser (UCSC)TLCD3B
Gene fusions - Rearrangements
Fusion : QuiverTLCD3B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTLCD3B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TLCD3B
dbVarTLCD3B
ClinVarTLCD3B
MonarchTLCD3B
1000_GenomesTLCD3B 
Exome Variant ServerTLCD3B
GNOMAD BrowserENSG00000149926
Varsome BrowserTLCD3B
ACMGTLCD3B variants
VarityQ71RH2
Genomic Variants (DGV)TLCD3B [DGVbeta]
DECIPHERTLCD3B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTLCD3B 
Mutations
ICGC Data PortalTLCD3B 
TCGA Data PortalTLCD3B 
Broad Tumor PortalTLCD3B
OASIS PortalTLCD3B [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTLCD3B
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTLCD3B
DgiDB (Drug Gene Interaction Database)TLCD3B
DoCM (Curated mutations)TLCD3B
CIViC (Clinical Interpretations of Variants in Cancer)TLCD3B
Cancer3DTLCD3B
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615175   
Orphanet
DisGeNETTLCD3B
MedgenTLCD3B
Genetic Testing Registry TLCD3B
NextProtQ71RH2 [Medical]
GENETestsTLCD3B
Target ValidationTLCD3B
Huge Navigator TLCD3B [HugePedia]
ClinGenTLCD3B
Clinical trials, drugs, therapy
MyCancerGenomeTLCD3B
Protein Interactions : CTDTLCD3B
Pharm GKB GenePA142671862
PharosQ71RH2
Clinical trialTLCD3B
Miscellaneous
canSAR (ICR)TLCD3B
HarmonizomeTLCD3B
DataMed IndexTLCD3B
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTLCD3B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:25:35 CEST 2021

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