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TLCD5 (TLC domain containing 5)

Identity

Alias (NCBI)TMEM136
HGNC (Hugo) TLCD5
HGNC Alias symbMGC17839
LocusID (NCBI) 219902
Atlas_Id 74800
Location 11q23.3  [Link to chromosome band 11q23]
Location_base_pair Starts at 120325299 and ends at 120333686 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



External links

 

Nomenclature
HGNC (Hugo)TLCD5   28280
Cards
Entrez_Gene (NCBI)TLCD5    TLC domain containing 5
AliasesTMEM136
GeneCards (Weizmann)TLCD5
Ensembl hg19 (Hinxton)ENSG00000181264 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000181264 [Gene_View]  ENSG00000181264 [Sequence]  chr11:120325299-120333686 [Contig_View]  TLCD5 [Vega]
ICGC DataPortalENSG00000181264
TCGA cBioPortalTLCD5
AceView (NCBI)TLCD5
Genatlas (Paris)TLCD5
SOURCE (Princeton)TLCD5
Genetics Home Reference (NIH)TLCD5
Genomic and cartography
GoldenPath hg38 (UCSC)TLCD5  -     chr11:120325299-120333686 +  11q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TLCD5  -     11q23.3   [Description]    (hg19-Feb_2009)
GoldenPathTLCD5 - 11q23.3 [CytoView hg19]  TLCD5 - 11q23.3 [CytoView hg38]
ImmunoBaseENSG00000181264
Genome Data Viewer NCBITLCD5 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK096207 AK128040 AK289680 AK294713 AK304086
RefSeq transcript (Entrez)NM_001198670 NM_001198671 NM_001198672 NM_001198673 NM_001198674 NM_001198675 NM_174926
Consensus coding sequences : CCDS (NCBI)TLCD5
Gene ExpressionTLCD5 [ NCBI-GEO ]   TLCD5 [ EBI - ARRAY_EXPRESS ]   TLCD5 [ SEEK ]   TLCD5 [ MEM ]
Gene Expression Viewer (FireBrowse)TLCD5 [ Firebrowse - Broad ]
GenevisibleExpression of TLCD5 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)219902
GTEX Portal (Tissue expression)TLCD5
Human Protein AtlasENSG00000181264-TLCD5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZRR5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZRR5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZRR5
PhosPhoSitePlusQ6ZRR5
Domaine pattern : Prosite (Expaxy)TLC (PS50922)   
Domains : Interpro (EBI)TLC-dom    TLCD5   
Domain families : Pfam (Sanger)TRAM_LAG1_CLN8 (PF03798)   
Domain families : Pfam (NCBI)pfam03798   
Domain families : Smart (EMBL)TLC (SM00724)  
Conserved Domain (NCBI)TLCD5
SuperfamilyQ6ZRR5
AlphaFold pdb e-kbQ6ZRR5   
Human Protein Atlas [tissue]ENSG00000181264-TLCD5 [tissue]
HPRD14461
Protein Interaction databases
DIP (DOE-UCLA)Q6ZRR5
IntAct (EBI)Q6ZRR5
BioGRIDTLCD5
STRING (EMBL)TLCD5
ZODIACTLCD5
Ontologies - Pathways
QuickGOQ6ZRR5
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkTLCD5
Atlas of Cancer Signalling NetworkTLCD5
Wikipedia pathwaysTLCD5
Orthology - Evolution
OrthoDB219902
GeneTree (enSembl)ENSG00000181264
Phylogenetic Trees/Animal Genes : TreeFamTLCD5
Homologs : HomoloGeneTLCD5
Homology/Alignments : Family Browser (UCSC)TLCD5
Gene fusions - Rearrangements
Fusion : QuiverTLCD5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTLCD5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TLCD5
dbVarTLCD5
ClinVarTLCD5
MonarchTLCD5
1000_GenomesTLCD5 
Exome Variant ServerTLCD5
GNOMAD BrowserENSG00000181264
Varsome BrowserTLCD5
ACMGTLCD5 variants
VarityQ6ZRR5
Genomic Variants (DGV)TLCD5 [DGVbeta]
DECIPHERTLCD5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTLCD5 
Mutations
ICGC Data PortalTLCD5 
TCGA Data PortalTLCD5 
Broad Tumor PortalTLCD5
OASIS PortalTLCD5 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTLCD5
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTLCD5
DgiDB (Drug Gene Interaction Database)TLCD5
DoCM (Curated mutations)TLCD5
CIViC (Clinical Interpretations of Variants in Cancer)TLCD5
Cancer3DTLCD5
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTLCD5
MedgenTLCD5
Genetic Testing Registry TLCD5
NextProtQ6ZRR5 [Medical]
GENETestsTLCD5
Target ValidationTLCD5
Huge Navigator TLCD5 [HugePedia]
ClinGenTLCD5
Clinical trials, drugs, therapy
MyCancerGenomeTLCD5
Protein Interactions : CTDTLCD5
Pharm GKB GenePA144596257
PharosQ6ZRR5
Clinical trialTLCD5
Miscellaneous
canSAR (ICR)TLCD5
HarmonizomeTLCD5
DataMed IndexTLCD5
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTLCD5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:25:36 CEST 2021

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