Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TLDC1 (TBC/LysM-associated domain containing 1)

Identity

Alias_namesKIAA1609
KIAA1609
Other alias
HGNC (Hugo) TLDC1
LocusID (NCBI) 57707
Atlas_Id 74719
Location 16q24.1  [Link to chromosome band 16q24]
Location_base_pair Starts at 84476360 and ends at 84504682 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TLDC1 (16q24.1) / CYBA (16q24.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TLDC1   29325
Cards
Entrez_Gene (NCBI)TLDC1  57707  TBC/LysM-associated domain containing 1
AliasesKIAA1609
GeneCards (Weizmann)TLDC1
Ensembl hg19 (Hinxton)ENSG00000140950 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000140950 [Gene_View]  chr16:84476360-84504682 [Contig_View]  TLDC1 [Vega]
ICGC DataPortalENSG00000140950
TCGA cBioPortalTLDC1
AceView (NCBI)TLDC1
Genatlas (Paris)TLDC1
WikiGenes57707
SOURCE (Princeton)TLDC1
Genetics Home Reference (NIH)TLDC1
Genomic and cartography
GoldenPath hg38 (UCSC)TLDC1  -     chr16:84476360-84504682 -  16q24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TLDC1  -     16q24.1   [Description]    (hg19-Feb_2009)
EnsemblTLDC1 - 16q24.1 [CytoView hg19]  TLDC1 - 16q24.1 [CytoView hg38]
Mapping of homologs : NCBITLDC1 [Mapview hg19]  TLDC1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA115393 AB046829 AK021995 AK291237 AK297241
RefSeq transcript (Entrez)NM_020947
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TLDC1
Cluster EST : UnigeneHs.288274 [ NCBI ]
CGAP (NCI)Hs.288274
Alternative Splicing GalleryENSG00000140950
Gene ExpressionTLDC1 [ NCBI-GEO ]   TLDC1 [ EBI - ARRAY_EXPRESS ]   TLDC1 [ SEEK ]   TLDC1 [ MEM ]
Gene Expression Viewer (FireBrowse)TLDC1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57707
GTEX Portal (Tissue expression)TLDC1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6P9B6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6P9B6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6P9B6
Splice isoforms : SwissVarQ6P9B6
PhosPhoSitePlusQ6P9B6
Domains : Interpro (EBI)TLDc_dom   
Domain families : Pfam (Sanger)TLD (PF07534)   
Domain families : Pfam (NCBI)pfam07534   
Domain families : Smart (EMBL)TLDc (SM00584)  
Conserved Domain (NCBI)TLDC1
DMDM Disease mutations57707
Blocks (Seattle)TLDC1
SuperfamilyQ6P9B6
Human Protein AtlasENSG00000140950
Peptide AtlasQ6P9B6
HPRD13877
IPIIPI00412243   IPI01010000   IPI01012247   IPI00979347   
Protein Interaction databases
DIP (DOE-UCLA)Q6P9B6
IntAct (EBI)Q6P9B6
FunCoupENSG00000140950
BioGRIDTLDC1
STRING (EMBL)TLDC1
ZODIACTLDC1
Ontologies - Pathways
QuickGOQ6P9B6
Ontology : AmiGOprotein binding  lysosomal membrane  negative regulation of oxidative stress-induced neuron death  
Ontology : EGO-EBIprotein binding  lysosomal membrane  negative regulation of oxidative stress-induced neuron death  
NDEx NetworkTLDC1
Atlas of Cancer Signalling NetworkTLDC1
Wikipedia pathwaysTLDC1
Orthology - Evolution
OrthoDB57707
GeneTree (enSembl)ENSG00000140950
Phylogenetic Trees/Animal Genes : TreeFamTLDC1
HOVERGENQ6P9B6
HOGENOMQ6P9B6
Homologs : HomoloGeneTLDC1
Homology/Alignments : Family Browser (UCSC)TLDC1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTLDC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TLDC1
dbVarTLDC1
ClinVarTLDC1
1000_GenomesTLDC1 
Exome Variant ServerTLDC1
ExAC (Exome Aggregation Consortium)TLDC1 (select the gene name)
Genetic variants : HAPMAP57707
Genomic Variants (DGV)TLDC1 [DGVbeta]
DECIPHERTLDC1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTLDC1 
Mutations
ICGC Data PortalTLDC1 
TCGA Data PortalTLDC1 
Broad Tumor PortalTLDC1
OASIS PortalTLDC1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTLDC1
BioMutasearch TLDC1
DgiDB (Drug Gene Interaction Database)TLDC1
DoCM (Curated mutations)TLDC1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TLDC1 (select a term)
intoGenTLDC1
Cancer3DTLDC1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTLDC1
Genetic Testing Registry TLDC1
NextProtQ6P9B6 [Medical]
TSGene57707
GENETestsTLDC1
Target ValidationTLDC1
Huge Navigator TLDC1 [HugePedia]
snp3D : Map Gene to Disease57707
BioCentury BCIQTLDC1
ClinGenTLDC1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57707
Chemical/Pharm GKB GenePA144596416
Clinical trialTLDC1
Miscellaneous
canSAR (ICR)TLDC1 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTLDC1
EVEXTLDC1
GoPubMedTLDC1
iHOPTLDC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:45:36 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.