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TLDC2 (TBC/LysM-associated domain containing 2)

Identity

Alias_namesC20orf118
chromosome 20 open reading frame 118
Alias_symbol (synonym)dJ132F21.2
Other alias
HGNC (Hugo) TLDC2
LocusID (NCBI) 140711
Atlas_Id 74720
Location 20q11.23  [Link to chromosome band 20q11]
Location_base_pair Starts at 35504524 and ends at 35522634 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
MED13 (17q23.2) / TLDC2 (20q11.23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TLDC2   16112
Cards
Entrez_Gene (NCBI)TLDC2  140711  TBC/LysM-associated domain containing 2
AliasesC20orf118
GeneCards (Weizmann)TLDC2
Ensembl hg19 (Hinxton)ENSG00000101342 [Gene_View]  chr20:35504524-35522634 [Contig_View]  TLDC2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000101342 [Gene_View]  chr20:35504524-35522634 [Contig_View]  TLDC2 [Vega]
ICGC DataPortalENSG00000101342
TCGA cBioPortalTLDC2
AceView (NCBI)TLDC2
Genatlas (Paris)TLDC2
WikiGenes140711
SOURCE (Princeton)TLDC2
Genetics Home Reference (NIH)TLDC2
Genomic and cartography
GoldenPath hg19 (UCSC)TLDC2  -     chr20:35504524-35522634 +  20q11.23   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TLDC2  -     20q11.23   [Description]    (hg38-Dec_2013)
EnsemblTLDC2 - 20q11.23 [CytoView hg19]  TLDC2 - 20q11.23 [CytoView hg38]
Mapping of homologs : NCBITLDC2 [Mapview hg19]  TLDC2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI537606 AK123544 BC127688 BC130646 BC130648
RefSeq transcript (Entrez)NM_001304783 NM_080628
RefSeq genomic (Entrez)NC_000020 NC_018931 NT_011362 NW_004929418
Consensus coding sequences : CCDS (NCBI)TLDC2
Cluster EST : UnigeneHs.472630 [ NCBI ]
CGAP (NCI)Hs.472630
Alternative Splicing GalleryENSG00000101342
Gene ExpressionTLDC2 [ NCBI-GEO ]   TLDC2 [ EBI - ARRAY_EXPRESS ]   TLDC2 [ SEEK ]   TLDC2 [ MEM ]
Gene Expression Viewer (FireBrowse)TLDC2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)140711
GTEX Portal (Tissue expression)TLDC2
Protein : pattern, domain, 3D structure
UniProt/SwissProtA0PJX2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA0PJX2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA0PJX2
Splice isoforms : SwissVarA0PJX2
PhosPhoSitePlusA0PJX2
Domains : Interpro (EBI)TLDc_dom   
Domain families : Pfam (Sanger)TLD (PF07534)   
Domain families : Pfam (NCBI)pfam07534   
Domain families : Smart (EMBL)TLDc (SM00584)  
Conserved Domain (NCBI)TLDC2
DMDM Disease mutations140711
Blocks (Seattle)TLDC2
SuperfamilyA0PJX2
Human Protein AtlasENSG00000101342
Peptide AtlasA0PJX2
HPRD18554
IPIIPI00552055   IPI00793092   
Protein Interaction databases
DIP (DOE-UCLA)A0PJX2
IntAct (EBI)A0PJX2
FunCoupENSG00000101342
BioGRIDTLDC2
STRING (EMBL)TLDC2
ZODIACTLDC2
Ontologies - Pathways
QuickGOA0PJX2
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkTLDC2
Atlas of Cancer Signalling NetworkTLDC2
Wikipedia pathwaysTLDC2
Orthology - Evolution
OrthoDB140711
GeneTree (enSembl)ENSG00000101342
Phylogenetic Trees/Animal Genes : TreeFamTLDC2
HOVERGENA0PJX2
HOGENOMA0PJX2
Homologs : HomoloGeneTLDC2
Homology/Alignments : Family Browser (UCSC)TLDC2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTLDC2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TLDC2
dbVarTLDC2
ClinVarTLDC2
1000_GenomesTLDC2 
Exome Variant ServerTLDC2
ExAC (Exome Aggregation Consortium)TLDC2 (select the gene name)
Genetic variants : HAPMAP140711
Genomic Variants (DGV)TLDC2 [DGVbeta]
DECIPHER (Syndromes)20:35504524-35522634  ENSG00000101342
CONAN: Copy Number AnalysisTLDC2 
Mutations
ICGC Data PortalTLDC2 
TCGA Data PortalTLDC2 
Broad Tumor PortalTLDC2
OASIS PortalTLDC2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTLDC2
BioMutasearch TLDC2
DgiDB (Drug Gene Interaction Database)TLDC2
DoCM (Curated mutations)TLDC2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TLDC2 (select a term)
intoGenTLDC2
Cancer3DTLDC2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTLDC2
Genetic Testing Registry TLDC2
NextProtA0PJX2 [Medical]
TSGene140711
GENETestsTLDC2
Huge Navigator TLDC2 [HugePedia]
snp3D : Map Gene to Disease140711
BioCentury BCIQTLDC2
ClinGenTLDC2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD140711
Chemical/Pharm GKB GenePA25658
Clinical trialTLDC2
Miscellaneous
canSAR (ICR)TLDC2 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTLDC2
EVEXTLDC2
GoPubMedTLDC2
iHOPTLDC2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:48:12 CET 2017

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