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TLNRD1 (talin rod domain containing 1)

Identity

Other aliasMESDC1
HGNC (Hugo) TLNRD1
LocusID (NCBI) 59274
Atlas_Id 56941
Location 15q25.1  [Link to chromosome band 15q25]
Location_base_pair Starts at 81000954 and ends at 81004004 bp from pter ( according to hg38-Dec_2013)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)TLNRD1   13519
Cards
Entrez_Gene (NCBI)TLNRD1  59274  talin rod domain containing 1
AliasesMESDC1
GeneCards (Weizmann)TLNRD1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr15:81000954-81004004 [Contig_View]  TLNRD1 [Vega]
TCGA cBioPortalTLNRD1
AceView (NCBI)TLNRD1
Genatlas (Paris)TLNRD1
WikiGenes59274
SOURCE (Princeton)TLNRD1
Genetics Home Reference (NIH)TLNRD1
Genomic and cartography
GoldenPath hg38 (UCSC)TLNRD1  -     chr15:81000954-81004004 +  15q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TLNRD1  -     15q25.1   [Description]    (hg19-Feb_2009)
EnsemblTLNRD1 - 15q25.1 [CytoView hg19]  TLNRD1 - 15q25.1 [CytoView hg38]
Mapping of homologs : NCBITLNRD1 [Mapview hg19]  TLNRD1 [Mapview hg38]
OMIM615466   
Gene and transcription
Genbank (Entrez)AY007810 BC001373 BC084554 CN370100 DN995580
RefSeq transcript (Entrez)NM_022566
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TLNRD1
Cluster EST : UnigeneHs.513071 [ NCBI ]
CGAP (NCI)Hs.513071
Gene ExpressionTLNRD1 [ NCBI-GEO ]   TLNRD1 [ EBI - ARRAY_EXPRESS ]   TLNRD1 [ SEEK ]   TLNRD1 [ MEM ]
Gene Expression Viewer (FireBrowse)TLNRD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)59274
GTEX Portal (Tissue expression)TLNRD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H1K6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H1K6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H1K6
Splice isoforms : SwissVarQ9H1K6
PhosPhoSitePlusQ9H1K6
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TLNRD1
DMDM Disease mutations59274
Blocks (Seattle)TLNRD1
SuperfamilyQ9H1K6
Peptide AtlasQ9H1K6
IPIIPI00021719   
Protein Interaction databases
DIP (DOE-UCLA)Q9H1K6
IntAct (EBI)Q9H1K6
BioGRIDTLNRD1
STRING (EMBL)TLNRD1
ZODIACTLNRD1
Ontologies - Pathways
QuickGOQ9H1K6
Ontology : AmiGOstress fiber  actin binding  
Ontology : EGO-EBIstress fiber  actin binding  
NDEx NetworkTLNRD1
Atlas of Cancer Signalling NetworkTLNRD1
Wikipedia pathwaysTLNRD1
Orthology - Evolution
OrthoDB59274
Phylogenetic Trees/Animal Genes : TreeFamTLNRD1
HOVERGENQ9H1K6
HOGENOMQ9H1K6
Homologs : HomoloGeneTLNRD1
Homology/Alignments : Family Browser (UCSC)TLNRD1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTLNRD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TLNRD1
dbVarTLNRD1
ClinVarTLNRD1
1000_GenomesTLNRD1 
Exome Variant ServerTLNRD1
ExAC (Exome Aggregation Consortium)TLNRD1 (select the gene name)
Genetic variants : HAPMAP59274
Genomic Variants (DGV)TLNRD1 [DGVbeta]
DECIPHERTLNRD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTLNRD1 
Mutations
ICGC Data PortalTLNRD1 
TCGA Data PortalTLNRD1 
Broad Tumor PortalTLNRD1
OASIS PortalTLNRD1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTLNRD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TLNRD1
DgiDB (Drug Gene Interaction Database)TLNRD1
DoCM (Curated mutations)TLNRD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TLNRD1 (select a term)
intoGenTLNRD1
Cancer3DTLNRD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615466   
Orphanet
MedgenTLNRD1
Genetic Testing Registry TLNRD1
NextProtQ9H1K6 [Medical]
TSGene59274
GENETestsTLNRD1
Target ValidationTLNRD1
Huge Navigator TLNRD1 [HugePedia]
snp3D : Map Gene to Disease59274
BioCentury BCIQTLNRD1
ClinGenTLNRD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD59274
Chemical/Pharm GKB GenePA30760
Clinical trialTLNRD1
Miscellaneous
canSAR (ICR)TLNRD1 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTLNRD1
EVEXTLNRD1
GoPubMedTLNRD1
iHOPTLNRD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:35:10 CEST 2017

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