Atlas of Genetics and Cytogenetics in Oncology and Haematology

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TLX1 (T cell leukemia homeobox 1)

Identity

Alias_namesTCL3
HOX11
homeo box 11 (T-cell lymphoma 3-associated breakpoint)
T-cell leukemia, homeobox 1
Other alias
HGNC (Hugo) TLX1
LocusID (NCBI) 3195
Atlas_Id 31
Location 10q24.31  [Link to chromosome band 10q24]
Location_base_pair Starts at 101131304 and ends at 101137789 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TLX1 (10q24.31) / TLX1 (10q24.31)TLX1 (10q24.31) / TRA ()TLX1 (10q24.31) / TRB ()
TLX1 (10q24.31) / TRBV20OR9-2 ()TLX1 (10q24.31) / TRD ()TRA () / TLX1 (10q24.31)
TRB () / TLX1 (10q24.31)TRD () / TLX1 (10q24.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Leukemias implicated (Data extracted from papers in the Atlas)

Leukemias 1014ID1068 PediatrTCellALLID1292 TL_t0710q34q24ID3261 TL_t0710q34q24ID3292 TL_t1010q23q24ID2923
TL_t1014q24q11ID3260 TL_t1014q24q11ID3283

External links

Nomenclature
HGNC (Hugo)TLX1   5056
Cards
Entrez_Gene (NCBI)TLX1  3195  T cell leukemia homeobox 1
AliasesHOX11; TCL3
GeneCards (Weizmann)TLX1
Ensembl hg19 (Hinxton)ENSG00000107807 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000107807 [Gene_View]  ENSG00000107807 [Sequence]  chr10:101131304-101137789 [Contig_View]  TLX1 [Vega]
ICGC DataPortalENSG00000107807
TCGA cBioPortalTLX1
AceView (NCBI)TLX1
Genatlas (Paris)TLX1
WikiGenes3195
SOURCE (Princeton)TLX1
Genetics Home Reference (NIH)TLX1
Genomic and cartography
GoldenPath hg38 (UCSC)TLX1  -     chr10:101131304-101137789 +  10q24.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TLX1  -     10q24.31   [Description]    (hg19-Feb_2009)
GoldenPathTLX1 - 10q24.31 [CytoView hg19]  TLX1 - 10q24.31 [CytoView hg38]
ImmunoBaseENSG00000107807
Mapping of homologs : NCBITLX1 [Mapview hg19]  TLX1 [Mapview hg38]
OMIM186770   
Gene and transcription
Genbank (Entrez)BC130530 BF514683 M62626 M75952 S38742
RefSeq transcript (Entrez)NM_001195517 NM_005521
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TLX1
Cluster EST : UnigeneHs.89583 [ NCBI ]
CGAP (NCI)Hs.89583
Alternative Splicing GalleryENSG00000107807
Gene ExpressionTLX1 [ NCBI-GEO ]   TLX1 [ EBI - ARRAY_EXPRESS ]   TLX1 [ SEEK ]   TLX1 [ MEM ]
Gene Expression Viewer (FireBrowse)TLX1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3195
GTEX Portal (Tissue expression)TLX1
Human Protein AtlasENSG00000107807-TLX1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP31314   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP31314  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP31314
Splice isoforms : SwissVarP31314
PhosPhoSitePlusP31314
Domaine pattern : Prosite (Expaxy)HOMEOBOX_1 (PS00027)    HOMEOBOX_2 (PS50071)   
Domains : Interpro (EBI)Homeobox-like_sf    Homeobox_CS    Homeobox_dom    Homeobox_metazoa   
Domain families : Pfam (Sanger)Homeobox (PF00046)   
Domain families : Pfam (NCBI)pfam00046   
Domain families : Smart (EMBL)HOX (SM00389)  
Conserved Domain (NCBI)TLX1
DMDM Disease mutations3195
Blocks (Seattle)TLX1
SuperfamilyP31314
Human Protein Atlas [tissue]ENSG00000107807-TLX1 [tissue]
Peptide AtlasP31314
HPRD01728
IPIIPI00011051   IPI00981206   IPI00983276   
Protein Interaction databases
DIP (DOE-UCLA)P31314
IntAct (EBI)P31314
FunCoupENSG00000107807
BioGRIDTLX1
STRING (EMBL)TLX1
ZODIACTLX1
Ontologies - Pathways
QuickGOP31314
Ontology : AmiGORNA polymerase II proximal promoter sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription activator activity, RNA polymerase II-specific  protein binding  nucleus  multicellular organism development  positive regulation of transcription by RNA polymerase II  
Ontology : EGO-EBIRNA polymerase II proximal promoter sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription activator activity, RNA polymerase II-specific  protein binding  nucleus  multicellular organism development  positive regulation of transcription by RNA polymerase II  
Pathways : KEGGTranscriptional misregulation in cancer   
NDEx NetworkTLX1
Atlas of Cancer Signalling NetworkTLX1
Wikipedia pathwaysTLX1
Orthology - Evolution
OrthoDB3195
GeneTree (enSembl)ENSG00000107807
Phylogenetic Trees/Animal Genes : TreeFamTLX1
HOGENOMP31314
Homologs : HomoloGeneTLX1
Homology/Alignments : Family Browser (UCSC)TLX1
Gene fusions - Rearrangements
Fusion : MitelmanTRB/TLX1 [-/10q24.31]  [t(10;14)(q24;q11)]  [t(7;10)(q34;q24)]  
Fusion : MitelmanTRD/TLX1 [-/10q24.31]  [t(10;14)(q24;q11)]  [t(7;10)(q34;q24)]  
Fusion : QuiverTLX1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTLX1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TLX1
dbVarTLX1
ClinVarTLX1
1000_GenomesTLX1 
Exome Variant ServerTLX1
ExAC (Exome Aggregation Consortium)ENSG00000107807
GNOMAD BrowserENSG00000107807
Varsome BrowserTLX1
Genetic variants : HAPMAP3195
Genomic Variants (DGV)TLX1 [DGVbeta]
DECIPHERTLX1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTLX1 
Mutations
ICGC Data PortalTLX1 
TCGA Data PortalTLX1 
Broad Tumor PortalTLX1
OASIS PortalTLX1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTLX1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTLX1
Mutations and Diseases : HGMDTLX1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TLX1
DgiDB (Drug Gene Interaction Database)TLX1
DoCM (Curated mutations)TLX1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TLX1 (select a term)
intoGenTLX1
Cancer3DTLX1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM186770   
Orphanet14434   
DisGeNETTLX1
MedgenTLX1
Genetic Testing Registry TLX1
NextProtP31314 [Medical]
TSGene3195
GENETestsTLX1
Target ValidationTLX1
Huge Navigator TLX1 [HugePedia]
snp3D : Map Gene to Disease3195
BioCentury BCIQTLX1
ClinGenTLX1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3195
Chemical/Pharm GKB GenePA35095
Clinical trialTLX1
Miscellaneous
canSAR (ICR)TLX1 (select the gene name)
DataMed IndexTLX1
Probes
Litterature
PubMed44 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTLX1
EVEXTLX1
GoPubMedTLX1
iHOPTLX1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Aug 12 15:59:23 CEST 2019
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