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TLX1NB (TLX1 neighbor)

Identity

Alias_symbol (synonym)TD1
TDI
APT-B7
Other alias
HGNC (Hugo) TLX1NB
LocusID (NCBI) 100038246
Atlas_Id 74726
Location 10q24.31  [Link to chromosome band 10q24]
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TLX1NB   37183
Cards
Entrez_Gene (NCBI)TLX1NB  100038246  TLX1 neighbor
AliasesAPT-B7; TD1; TDI
GeneCards (Weizmann)TLX1NB
Ensembl hg19 (Hinxton)ENSG00000236311 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000236311 [Gene_View]  - [Contig_View]  TLX1NB [Vega]
ICGC DataPortalENSG00000236311
TCGA cBioPortalTLX1NB
AceView (NCBI)TLX1NB
Genatlas (Paris)TLX1NB
WikiGenes100038246
SOURCE (Princeton)TLX1NB
Genetics Home Reference (NIH)TLX1NB
Genomic and cartography
GoldenPath hg38 (UCSC)TLX1NB  -  
GoldenPath hg19 (UCSC)TLX1NB  -  
EnsemblTLX1NB - [CytoView hg19]  TLX1NB - [CytoView hg38]
Mapping of homologs : NCBITLX1NB [Mapview hg19]  TLX1NB [Mapview hg38]
OMIM612734   
Gene and transcription
Genbank (Entrez)AI184724 BC019674 BI770592 BX117337 Y11608
RefSeq transcript (Entrez)NM_001085398
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TLX1NB
Cluster EST : UnigeneHs.662323 [ NCBI ]
CGAP (NCI)Hs.662323
Alternative Splicing GalleryENSG00000236311
Gene ExpressionTLX1NB [ NCBI-GEO ]   TLX1NB [ EBI - ARRAY_EXPRESS ]   TLX1NB [ SEEK ]   TLX1NB [ MEM ]
Gene Expression Viewer (FireBrowse)TLX1NB [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100038246
GTEX Portal (Tissue expression)TLX1NB
Human Protein AtlasENSG00000236311-TLX1NB [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0CAT3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0CAT3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0CAT3
Splice isoforms : SwissVarP0CAT3
PhosPhoSitePlusP0CAT3
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TLX1NB
DMDM Disease mutations100038246
Blocks (Seattle)TLX1NB
SuperfamilyP0CAT3
Human Protein Atlas [tissue]ENSG00000236311-TLX1NB [tissue]
Peptide AtlasP0CAT3
IPIIPI00748622   
Protein Interaction databases
DIP (DOE-UCLA)P0CAT3
IntAct (EBI)P0CAT3
FunCoupENSG00000236311
BioGRIDTLX1NB
STRING (EMBL)TLX1NB
ZODIACTLX1NB
Ontologies - Pathways
QuickGOP0CAT3
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkTLX1NB
Atlas of Cancer Signalling NetworkTLX1NB
Wikipedia pathwaysTLX1NB
Orthology - Evolution
OrthoDB100038246
GeneTree (enSembl)ENSG00000236311
Phylogenetic Trees/Animal Genes : TreeFamTLX1NB
HOVERGENP0CAT3
HOGENOMP0CAT3
Homologs : HomoloGeneTLX1NB
Homology/Alignments : Family Browser (UCSC)TLX1NB
Gene fusions - Rearrangements
Tumor Fusion PortalTLX1NB
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTLX1NB [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TLX1NB
dbVarTLX1NB
ClinVarTLX1NB
1000_GenomesTLX1NB 
Exome Variant ServerTLX1NB
ExAC (Exome Aggregation Consortium)ENSG00000236311
GNOMAD BrowserENSG00000236311
Genetic variants : HAPMAP100038246
Genomic Variants (DGV)TLX1NB [DGVbeta]
DECIPHERTLX1NB [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTLX1NB 
Mutations
ICGC Data PortalTLX1NB 
TCGA Data PortalTLX1NB 
Broad Tumor PortalTLX1NB
OASIS PortalTLX1NB [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTLX1NB
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TLX1NB
DgiDB (Drug Gene Interaction Database)TLX1NB
DoCM (Curated mutations)TLX1NB (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TLX1NB (select a term)
intoGenTLX1NB
Cancer3DTLX1NB(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612734   
Orphanet
DisGeNETTLX1NB
MedgenTLX1NB
Genetic Testing Registry TLX1NB
NextProtP0CAT3 [Medical]
TSGene100038246
GENETestsTLX1NB
Target ValidationTLX1NB
Huge Navigator TLX1NB [HugePedia]
snp3D : Map Gene to Disease100038246
BioCentury BCIQTLX1NB
ClinGenTLX1NB
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100038246
Chemical/Pharm GKB GenePA165549107
Clinical trialTLX1NB
Miscellaneous
canSAR (ICR)TLX1NB (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTLX1NB
EVEXTLX1NB
GoPubMedTLX1NB
iHOPTLX1NB
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:22:43 CET 2017

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