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TLX1NB (TLX1 neighbor)

Identity

Alias (NCBI)APT-B7
TD1
TDI
HGNC (Hugo) TLX1NB
HGNC Alias symbTD1
TDI
APT-B7
LocusID (NCBI) 100038246
Atlas_Id 74726
Location 10q24.31  [Link to chromosome band 10q24]
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Leukemias implicated (Data extracted from papers in the Atlas) [ 4 ]
  t(10;14)(q24;q11) TLX1NB/TRDC
t(10;14)(q24;q11) TLX1NB/TRD
t(10;14)(q24;q11) TLX1NB/TRDC
t(10;14)(q24;q11) TLX1NB/TRD


External links

 

Nomenclature
HGNC (Hugo)TLX1NB   37183
Cards
Entrez_Gene (NCBI)TLX1NB    TLX1 neighbor
AliasesAPT-B7; TD1; TDI
GeneCards (Weizmann)TLX1NB
Ensembl hg19 (Hinxton)ENSG00000236311 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000236311 [Gene_View]  ENSG00000236311 [Sequence]  - [Contig_View]  TLX1NB [Vega]
ICGC DataPortalENSG00000236311
TCGA cBioPortalTLX1NB
AceView (NCBI)TLX1NB
Genatlas (Paris)TLX1NB
SOURCE (Princeton)TLX1NB
Genetics Home Reference (NIH)TLX1NB
Genomic and cartography
GoldenPath hg38 (UCSC)TLX1NB  -  
GoldenPath hg19 (UCSC)TLX1NB  -  
GoldenPathTLX1NB - [CytoView hg19]  TLX1NB - [CytoView hg38]
ImmunoBaseENSG00000236311
Genome Data Viewer NCBITLX1NB [Mapview hg19]  
OMIM612734   
Gene and transcription
Genbank (Entrez)AI184724 BC019674 BI770592 BX117337 Y11608
RefSeq transcript (Entrez)NM_001085398
Consensus coding sequences : CCDS (NCBI)TLX1NB
Gene ExpressionTLX1NB [ NCBI-GEO ]   TLX1NB [ EBI - ARRAY_EXPRESS ]   TLX1NB [ SEEK ]   TLX1NB [ MEM ]
Gene Expression Viewer (FireBrowse)TLX1NB [ Firebrowse - Broad ]
GenevisibleExpression of TLX1NB in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100038246
GTEX Portal (Tissue expression)TLX1NB
Human Protein AtlasENSG00000236311-TLX1NB [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0CAT3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0CAT3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0CAT3
PhosPhoSitePlusP0CAT3
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TLX1NB
SuperfamilyP0CAT3
AlphaFold pdb e-kbP0CAT3   
Human Protein Atlas [tissue]ENSG00000236311-TLX1NB [tissue]
Protein Interaction databases
DIP (DOE-UCLA)P0CAT3
IntAct (EBI)P0CAT3
BioGRIDTLX1NB
STRING (EMBL)TLX1NB
ZODIACTLX1NB
Ontologies - Pathways
QuickGOP0CAT3
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkTLX1NB
Atlas of Cancer Signalling NetworkTLX1NB
Wikipedia pathwaysTLX1NB
Orthology - Evolution
OrthoDB100038246
GeneTree (enSembl)ENSG00000236311
Phylogenetic Trees/Animal Genes : TreeFamTLX1NB
Homologs : HomoloGeneTLX1NB
Homology/Alignments : Family Browser (UCSC)TLX1NB
Gene fusions - Rearrangements
Fusion : QuiverTLX1NB
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTLX1NB [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TLX1NB
dbVarTLX1NB
ClinVarTLX1NB
MonarchTLX1NB
1000_GenomesTLX1NB 
Exome Variant ServerTLX1NB
GNOMAD BrowserENSG00000236311
Varsome BrowserTLX1NB
ACMGTLX1NB variants
VarityP0CAT3
Genomic Variants (DGV)TLX1NB [DGVbeta]
DECIPHERTLX1NB [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTLX1NB 
Mutations
ICGC Data PortalTLX1NB 
TCGA Data PortalTLX1NB 
Broad Tumor PortalTLX1NB
OASIS PortalTLX1NB [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTLX1NB
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTLX1NB
DgiDB (Drug Gene Interaction Database)TLX1NB
DoCM (Curated mutations)TLX1NB
CIViC (Clinical Interpretations of Variants in Cancer)TLX1NB
Cancer3DTLX1NB
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612734   
Orphanet
DisGeNETTLX1NB
MedgenTLX1NB
Genetic Testing Registry TLX1NB
NextProtP0CAT3 [Medical]
GENETestsTLX1NB
Target ValidationTLX1NB
Huge Navigator TLX1NB [HugePedia]
ClinGenTLX1NB
Clinical trials, drugs, therapy
MyCancerGenomeTLX1NB
Protein Interactions : CTDTLX1NB
Pharm GKB GenePA165549107
PharosP0CAT3
Clinical trialTLX1NB
Miscellaneous
canSAR (ICR)TLX1NB
HarmonizomeTLX1NB
DataMed IndexTLX1NB
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTLX1NB
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 16:25:37 CEST 2021

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