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TM2D1 (TM2 domain containing 1)

Identity

Alias_symbol (synonym)BBP
Other alias
HGNC (Hugo) TM2D1
LocusID (NCBI) 83941
Atlas_Id 74727
Location 1p31.3  [Link to chromosome band 1p31]
Location_base_pair Starts at 61681047 and ends at 61725423 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
GPI (19q13.11) / TM2D1 (1p31.3)INS-IGF2 (11p15.5) / TM2D1 (1p31.3)TM2D1 (1p31.3) / TM2D1 (1p31.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TM2D1   24142
Cards
Entrez_Gene (NCBI)TM2D1  83941  TM2 domain containing 1
AliasesBBP
GeneCards (Weizmann)TM2D1
Ensembl hg19 (Hinxton)ENSG00000162604 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162604 [Gene_View]  chr1:61681047-61725423 [Contig_View]  TM2D1 [Vega]
ICGC DataPortalENSG00000162604
TCGA cBioPortalTM2D1
AceView (NCBI)TM2D1
Genatlas (Paris)TM2D1
WikiGenes83941
SOURCE (Princeton)TM2D1
Genetics Home Reference (NIH)TM2D1
Genomic and cartography
GoldenPath hg38 (UCSC)TM2D1  -     chr1:61681047-61725423 -  1p31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TM2D1  -     1p31.3   [Description]    (hg19-Feb_2009)
EnsemblTM2D1 - 1p31.3 [CytoView hg19]  TM2D1 - 1p31.3 [CytoView hg38]
Mapping of homologs : NCBITM2D1 [Mapview hg19]  TM2D1 [Mapview hg38]
OMIM610080   
Gene and transcription
Genbank (Entrez)AF353990 AI168073 AK311444 AK311705 BC029486
RefSeq transcript (Entrez)NM_032027
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TM2D1
Cluster EST : UnigeneHs.656790 [ NCBI ]
CGAP (NCI)Hs.656790
Alternative Splicing GalleryENSG00000162604
Gene ExpressionTM2D1 [ NCBI-GEO ]   TM2D1 [ EBI - ARRAY_EXPRESS ]   TM2D1 [ SEEK ]   TM2D1 [ MEM ]
Gene Expression Viewer (FireBrowse)TM2D1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83941
GTEX Portal (Tissue expression)TM2D1
Human Protein AtlasENSG00000162604-TM2D1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BX74   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BX74  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BX74
Splice isoforms : SwissVarQ9BX74
PhosPhoSitePlusQ9BX74
Domains : Interpro (EBI)TM2   
Domain families : Pfam (Sanger)TM2 (PF05154)   
Domain families : Pfam (NCBI)pfam05154   
Conserved Domain (NCBI)TM2D1
DMDM Disease mutations83941
Blocks (Seattle)TM2D1
SuperfamilyQ9BX74
Human Protein Atlas [tissue]ENSG00000162604-TM2D1 [tissue]
Peptide AtlasQ9BX74
HPRD16540
IPIIPI00104219   IPI00645683   IPI00646722   
Protein Interaction databases
DIP (DOE-UCLA)Q9BX74
IntAct (EBI)Q9BX74
FunCoupENSG00000162604
BioGRIDTM2D1
STRING (EMBL)TM2D1
ZODIACTM2D1
Ontologies - Pathways
QuickGOQ9BX74
Ontology : AmiGObeta-amyloid binding  G-protein coupled receptor activity  integral component of plasma membrane  G-protein coupled receptor signaling pathway  apoptotic signaling pathway  
Ontology : EGO-EBIbeta-amyloid binding  G-protein coupled receptor activity  integral component of plasma membrane  G-protein coupled receptor signaling pathway  apoptotic signaling pathway  
NDEx NetworkTM2D1
Atlas of Cancer Signalling NetworkTM2D1
Wikipedia pathwaysTM2D1
Orthology - Evolution
OrthoDB83941
GeneTree (enSembl)ENSG00000162604
Phylogenetic Trees/Animal Genes : TreeFamTM2D1
HOVERGENQ9BX74
HOGENOMQ9BX74
Homologs : HomoloGeneTM2D1
Homology/Alignments : Family Browser (UCSC)TM2D1
Gene fusions - Rearrangements
Fusion: Tumor Portal TM2D1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTM2D1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TM2D1
dbVarTM2D1
ClinVarTM2D1
1000_GenomesTM2D1 
Exome Variant ServerTM2D1
ExAC (Exome Aggregation Consortium)ENSG00000162604
GNOMAD BrowserENSG00000162604
Genetic variants : HAPMAP83941
Genomic Variants (DGV)TM2D1 [DGVbeta]
DECIPHERTM2D1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTM2D1 
Mutations
ICGC Data PortalTM2D1 
TCGA Data PortalTM2D1 
Broad Tumor PortalTM2D1
OASIS PortalTM2D1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTM2D1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTM2D1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TM2D1
DgiDB (Drug Gene Interaction Database)TM2D1
DoCM (Curated mutations)TM2D1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TM2D1 (select a term)
intoGenTM2D1
Cancer3DTM2D1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610080   
Orphanet
MedgenTM2D1
Genetic Testing Registry TM2D1
NextProtQ9BX74 [Medical]
TSGene83941
GENETestsTM2D1
Target ValidationTM2D1
Huge Navigator TM2D1 [HugePedia]
snp3D : Map Gene to Disease83941
BioCentury BCIQTM2D1
ClinGenTM2D1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83941
Chemical/Pharm GKB GenePA142670798
Clinical trialTM2D1
Miscellaneous
canSAR (ICR)TM2D1 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTM2D1
EVEXTM2D1
GoPubMedTM2D1
iHOPTM2D1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Thu Nov 9 12:32:29 CET 2017

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