Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TM2D2 (TM2 domain containing 2)

Identity

Alias_symbol (synonym)BLP1
Other alias
HGNC (Hugo) TM2D2
LocusID (NCBI) 83877
Atlas_Id 74728
Location 8p11.22  [Link to chromosome band 8p11]
Location_base_pair Starts at 38988808 and ends at 38996522 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
HOOK3 (8p11.21) / TM2D2 (8p11.22)TCF20 (22q13.2) / TM2D2 (8p11.22)TM2D2 (8p11.22) / ADAM9 (8p11.22)
TM2D2 (8p11.22) / MSI2 (17q22)TM2D2 ADAM9TM2D2 MSI2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TM2D2   24127
Cards
Entrez_Gene (NCBI)TM2D2  83877  TM2 domain containing 2
AliasesBLP1
GeneCards (Weizmann)TM2D2
Ensembl hg19 (Hinxton)ENSG00000169490 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000169490 [Gene_View]  chr8:38988808-38996522 [Contig_View]  TM2D2 [Vega]
ICGC DataPortalENSG00000169490
TCGA cBioPortalTM2D2
AceView (NCBI)TM2D2
Genatlas (Paris)TM2D2
WikiGenes83877
SOURCE (Princeton)TM2D2
Genetics Home Reference (NIH)TM2D2
Genomic and cartography
GoldenPath hg38 (UCSC)TM2D2  -     chr8:38988808-38996522 -  8p11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TM2D2  -     8p11.22   [Description]    (hg19-Feb_2009)
EnsemblTM2D2 - 8p11.22 [CytoView hg19]  TM2D2 - 8p11.22 [CytoView hg38]
Mapping of homologs : NCBITM2D2 [Mapview hg19]  TM2D2 [Mapview hg38]
OMIM610081   
Gene and transcription
Genbank (Entrez)AF353991 AK075027 AK075155 AK225093 AK314703
RefSeq transcript (Entrez)NM_001024380 NM_001024381 NM_031940 NM_078473
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TM2D2
Cluster EST : UnigeneHs.7471 [ NCBI ]
CGAP (NCI)Hs.7471
Alternative Splicing GalleryENSG00000169490
Gene ExpressionTM2D2 [ NCBI-GEO ]   TM2D2 [ EBI - ARRAY_EXPRESS ]   TM2D2 [ SEEK ]   TM2D2 [ MEM ]
Gene Expression Viewer (FireBrowse)TM2D2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83877
GTEX Portal (Tissue expression)TM2D2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BX73   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BX73  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BX73
Splice isoforms : SwissVarQ9BX73
PhosPhoSitePlusQ9BX73
Domains : Interpro (EBI)TM2   
Domain families : Pfam (Sanger)TM2 (PF05154)   
Domain families : Pfam (NCBI)pfam05154   
Conserved Domain (NCBI)TM2D2
DMDM Disease mutations83877
Blocks (Seattle)TM2D2
SuperfamilyQ9BX73
Human Protein AtlasENSG00000169490
Peptide AtlasQ9BX73
HPRD16553
IPIIPI00032696   IPI00418667   IPI00980564   IPI00985183   IPI00981319   
Protein Interaction databases
DIP (DOE-UCLA)Q9BX73
IntAct (EBI)Q9BX73
FunCoupENSG00000169490
BioGRIDTM2D2
STRING (EMBL)TM2D2
ZODIACTM2D2
Ontologies - Pathways
QuickGOQ9BX73
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkTM2D2
Atlas of Cancer Signalling NetworkTM2D2
Wikipedia pathwaysTM2D2
Orthology - Evolution
OrthoDB83877
GeneTree (enSembl)ENSG00000169490
Phylogenetic Trees/Animal Genes : TreeFamTM2D2
HOVERGENQ9BX73
HOGENOMQ9BX73
Homologs : HomoloGeneTM2D2
Homology/Alignments : Family Browser (UCSC)TM2D2
Gene fusions - Rearrangements
Fusion: TCGATM2D2 ADAM9
Fusion: TCGATM2D2 MSI2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTM2D2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TM2D2
dbVarTM2D2
ClinVarTM2D2
1000_GenomesTM2D2 
Exome Variant ServerTM2D2
ExAC (Exome Aggregation Consortium)TM2D2 (select the gene name)
Genetic variants : HAPMAP83877
Genomic Variants (DGV)TM2D2 [DGVbeta]
DECIPHERTM2D2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTM2D2 
Mutations
ICGC Data PortalTM2D2 
TCGA Data PortalTM2D2 
Broad Tumor PortalTM2D2
OASIS PortalTM2D2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTM2D2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTM2D2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TM2D2
DgiDB (Drug Gene Interaction Database)TM2D2
DoCM (Curated mutations)TM2D2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TM2D2 (select a term)
intoGenTM2D2
Cancer3DTM2D2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610081   
Orphanet
MedgenTM2D2
Genetic Testing Registry TM2D2
NextProtQ9BX73 [Medical]
TSGene83877
GENETestsTM2D2
Target ValidationTM2D2
Huge Navigator TM2D2 [HugePedia]
snp3D : Map Gene to Disease83877
BioCentury BCIQTM2D2
ClinGenTM2D2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83877
Chemical/Pharm GKB GenePA142670799
Clinical trialTM2D2
Miscellaneous
canSAR (ICR)TM2D2 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTM2D2
EVEXTM2D2
GoPubMedTM2D2
iHOPTM2D2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:45:38 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.