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TM2D3 (TM2 domain containing 3)

Identity

Alias_symbol (synonym)BLP2
FLJ22604
Other alias
HGNC (Hugo) TM2D3
LocusID (NCBI) 80213
Atlas_Id 74729
Location 15q26.3  [Link to chromosome band 15q26]
Location_base_pair Starts at 101632977 and ends at 101652391 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TM2D3   24128
Cards
Entrez_Gene (NCBI)TM2D3  80213  TM2 domain containing 3
AliasesBLP2
GeneCards (Weizmann)TM2D3
Ensembl hg19 (Hinxton)ENSG00000184277 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000184277 [Gene_View]  chr15:101632977-101652391 [Contig_View]  TM2D3 [Vega]
ICGC DataPortalENSG00000184277
TCGA cBioPortalTM2D3
AceView (NCBI)TM2D3
Genatlas (Paris)TM2D3
WikiGenes80213
SOURCE (Princeton)TM2D3
Genetics Home Reference (NIH)TM2D3
Genomic and cartography
GoldenPath hg38 (UCSC)TM2D3  -     chr15:101632977-101652391 -  15q26.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TM2D3  -     15q26.3   [Description]    (hg19-Feb_2009)
EnsemblTM2D3 - 15q26.3 [CytoView hg19]  TM2D3 - 15q26.3 [CytoView hg38]
Mapping of homologs : NCBITM2D3 [Mapview hg19]  TM2D3 [Mapview hg38]
OMIM610014   
Gene and transcription
Genbank (Entrez)AF353992 AK026257 AK094955 AK296553 AK297048
RefSeq transcript (Entrez)NM_001307960 NM_001308026 NM_025141 NM_078474
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TM2D3
Cluster EST : UnigeneHs.288912 [ NCBI ]
CGAP (NCI)Hs.288912
Alternative Splicing GalleryENSG00000184277
Gene ExpressionTM2D3 [ NCBI-GEO ]   TM2D3 [ EBI - ARRAY_EXPRESS ]   TM2D3 [ SEEK ]   TM2D3 [ MEM ]
Gene Expression Viewer (FireBrowse)TM2D3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80213
GTEX Portal (Tissue expression)TM2D3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BRN9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BRN9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BRN9
Splice isoforms : SwissVarQ9BRN9
PhosPhoSitePlusQ9BRN9
Domains : Interpro (EBI)TM2   
Domain families : Pfam (Sanger)TM2 (PF05154)   
Domain families : Pfam (NCBI)pfam05154   
Conserved Domain (NCBI)TM2D3
DMDM Disease mutations80213
Blocks (Seattle)TM2D3
SuperfamilyQ9BRN9
Human Protein AtlasENSG00000184277
Peptide AtlasQ9BRN9
HPRD16554
IPIIPI00022654   IPI00018607   IPI00910676   IPI00910008   
Protein Interaction databases
DIP (DOE-UCLA)Q9BRN9
IntAct (EBI)Q9BRN9
FunCoupENSG00000184277
BioGRIDTM2D3
STRING (EMBL)TM2D3
ZODIACTM2D3
Ontologies - Pathways
QuickGOQ9BRN9
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkTM2D3
Atlas of Cancer Signalling NetworkTM2D3
Wikipedia pathwaysTM2D3
Orthology - Evolution
OrthoDB80213
GeneTree (enSembl)ENSG00000184277
Phylogenetic Trees/Animal Genes : TreeFamTM2D3
HOVERGENQ9BRN9
HOGENOMQ9BRN9
Homologs : HomoloGeneTM2D3
Homology/Alignments : Family Browser (UCSC)TM2D3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTM2D3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TM2D3
dbVarTM2D3
ClinVarTM2D3
1000_GenomesTM2D3 
Exome Variant ServerTM2D3
ExAC (Exome Aggregation Consortium)TM2D3 (select the gene name)
Genetic variants : HAPMAP80213
Genomic Variants (DGV)TM2D3 [DGVbeta]
DECIPHERTM2D3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTM2D3 
Mutations
ICGC Data PortalTM2D3 
TCGA Data PortalTM2D3 
Broad Tumor PortalTM2D3
OASIS PortalTM2D3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTM2D3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTM2D3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TM2D3
DgiDB (Drug Gene Interaction Database)TM2D3
DoCM (Curated mutations)TM2D3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TM2D3 (select a term)
intoGenTM2D3
Cancer3DTM2D3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610014   
Orphanet
MedgenTM2D3
Genetic Testing Registry TM2D3
NextProtQ9BRN9 [Medical]
TSGene80213
GENETestsTM2D3
Target ValidationTM2D3
Huge Navigator TM2D3 [HugePedia]
snp3D : Map Gene to Disease80213
BioCentury BCIQTM2D3
ClinGenTM2D3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80213
Chemical/Pharm GKB GenePA142670800
Clinical trialTM2D3
Miscellaneous
canSAR (ICR)TM2D3 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTM2D3
EVEXTM2D3
GoPubMedTM2D3
iHOPTM2D3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Sep 18 13:41:31 CEST 2017

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