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TM2D3 (TM2 domain containing 3)

Identity

Alias (NCBI)BLP2
HGNC (Hugo) TM2D3
HGNC Alias symbBLP2
FLJ22604
HGNC Alias namealmondex homolog
LocusID (NCBI) 80213
Atlas_Id 57826
Location 15q26.3  [Link to chromosome band 15q26]
Location_base_pair Starts at 101641849 and ends at 101652381 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TM2D3   24128
Cards
Entrez_Gene (NCBI)TM2D3    TM2 domain containing 3
AliasesBLP2
GeneCards (Weizmann)TM2D3
Ensembl hg19 (Hinxton)ENSG00000184277 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000184277 [Gene_View]  ENSG00000184277 [Sequence]  chr15:101641849-101652381 [Contig_View]  TM2D3 [Vega]
ICGC DataPortalENSG00000184277
TCGA cBioPortalTM2D3
AceView (NCBI)TM2D3
Genatlas (Paris)TM2D3
SOURCE (Princeton)TM2D3
Genetics Home Reference (NIH)TM2D3
Genomic and cartography
GoldenPath hg38 (UCSC)TM2D3  -     chr15:101641849-101652381 -  15q26.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TM2D3  -     15q26.3   [Description]    (hg19-Feb_2009)
GoldenPathTM2D3 - 15q26.3 [CytoView hg19]  TM2D3 - 15q26.3 [CytoView hg38]
ImmunoBaseENSG00000184277
Genome Data Viewer NCBITM2D3 [Mapview hg19]  
OMIM610014   
Gene and transcription
Genbank (Entrez)AF353992 AK026257 AK094955 AK296553 AK297048
RefSeq transcript (Entrez)NM_001307960 NM_001308026 NM_025141 NM_078474
Consensus coding sequences : CCDS (NCBI)TM2D3
Gene ExpressionTM2D3 [ NCBI-GEO ]   TM2D3 [ EBI - ARRAY_EXPRESS ]   TM2D3 [ SEEK ]   TM2D3 [ MEM ]
Gene Expression Viewer (FireBrowse)TM2D3 [ Firebrowse - Broad ]
GenevisibleExpression of TM2D3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80213
GTEX Portal (Tissue expression)TM2D3
Human Protein AtlasENSG00000184277-TM2D3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BRN9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BRN9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BRN9
PhosPhoSitePlusQ9BRN9
Domains : Interpro (EBI)TM2   
Domain families : Pfam (Sanger)TM2 (PF05154)   
Domain families : Pfam (NCBI)pfam05154   
Conserved Domain (NCBI)TM2D3
SuperfamilyQ9BRN9
AlphaFold pdb e-kbQ9BRN9   
Human Protein Atlas [tissue]ENSG00000184277-TM2D3 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q9BRN9
IntAct (EBI)Q9BRN9
BioGRIDTM2D3
STRING (EMBL)TM2D3
ZODIACTM2D3
Ontologies - Pathways
QuickGOQ9BRN9
Ontology : AmiGOspanning component of plasma membrane  positive regulation of Notch signaling pathway  lateral inhibition  lateral inhibition  
Ontology : EGO-EBIspanning component of plasma membrane  positive regulation of Notch signaling pathway  lateral inhibition  lateral inhibition  
NDEx NetworkTM2D3
Atlas of Cancer Signalling NetworkTM2D3
Wikipedia pathwaysTM2D3
Orthology - Evolution
OrthoDB80213
GeneTree (enSembl)ENSG00000184277
Phylogenetic Trees/Animal Genes : TreeFamTM2D3
Homologs : HomoloGeneTM2D3
Homology/Alignments : Family Browser (UCSC)TM2D3
Gene fusions - Rearrangements
Fusion : QuiverTM2D3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTM2D3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TM2D3
dbVarTM2D3
ClinVarTM2D3
MonarchTM2D3
1000_GenomesTM2D3 
Exome Variant ServerTM2D3
GNOMAD BrowserENSG00000184277
Varsome BrowserTM2D3
ACMGTM2D3 variants
VarityQ9BRN9
Genomic Variants (DGV)TM2D3 [DGVbeta]
DECIPHERTM2D3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTM2D3 
Mutations
ICGC Data PortalTM2D3 
TCGA Data PortalTM2D3 
Broad Tumor PortalTM2D3
OASIS PortalTM2D3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTM2D3  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTM2D3
Mutations and Diseases : HGMDTM2D3
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTM2D3
DgiDB (Drug Gene Interaction Database)TM2D3
DoCM (Curated mutations)TM2D3
CIViC (Clinical Interpretations of Variants in Cancer)TM2D3
Cancer3DTM2D3
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610014   
Orphanet
DisGeNETTM2D3
MedgenTM2D3
Genetic Testing Registry TM2D3
NextProtQ9BRN9 [Medical]
GENETestsTM2D3
Target ValidationTM2D3
Huge Navigator TM2D3 [HugePedia]
ClinGenTM2D3
Clinical trials, drugs, therapy
MyCancerGenomeTM2D3
Protein Interactions : CTDTM2D3
Pharm GKB GenePA142670800
PharosQ9BRN9
Clinical trialTM2D3
Miscellaneous
canSAR (ICR)TM2D3
HarmonizomeTM2D3
DataMed IndexTM2D3
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTM2D3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:35:16 CEST 2021

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