Atlas of Genetics and Cytogenetics in Oncology and Haematology

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TM4SF1-AS1 (TM4SF1 antisense RNA 1)


Alias (NCBI)-
HGNC (Hugo) TM4SF1-AS1
HGNC Previous nameTM4SF1 antisense RNA 1 (non-protein coding)
LocusID (NCBI) 100874091
Atlas_Id 74734
Location 3q25.1  [Link to chromosome band 3q25]
Location_base_pair Starts at 149377778 and ends at 149386583 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)


Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



External links

HGNC (Hugo)TM4SF1-AS1   40587
Entrez_Gene (NCBI)TM4SF1-AS1    TM4SF1 antisense RNA 1
GeneCards (Weizmann)TM4SF1-AS1
Ensembl hg19 (Hinxton)ENSG00000240541 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000240541 [Gene_View]  ENSG00000240541 [Sequence]  chr3:149377778-149386583 [Contig_View]  TM4SF1-AS1 [Vega]
ICGC DataPortalENSG00000240541
TCGA cBioPortalTM4SF1-AS1
AceView (NCBI)TM4SF1-AS1
Genatlas (Paris)TM4SF1-AS1
SOURCE (Princeton)TM4SF1-AS1
Genetics Home Reference (NIH)TM4SF1-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)TM4SF1-AS1  -     chr3:149377778-149386583 +  3q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TM4SF1-AS1  -     3q25.1   [Description]    (hg19-Feb_2009)
GoldenPathTM4SF1-AS1 - 3q25.1 [CytoView hg19]  TM4SF1-AS1 - 3q25.1 [CytoView hg38]
Genome Data Viewer NCBITM4SF1-AS1 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)BU753850 CB956551 FN058250
RefSeq transcript (Entrez)
Consensus coding sequences : CCDS (NCBI)TM4SF1-AS1
Gene ExpressionTM4SF1-AS1 [ NCBI-GEO ]   TM4SF1-AS1 [ EBI - ARRAY_EXPRESS ]   TM4SF1-AS1 [ SEEK ]   TM4SF1-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)TM4SF1-AS1 [ Firebrowse - Broad ]
GenevisibleExpression of TM4SF1-AS1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100874091
GTEX Portal (Tissue expression)TM4SF1-AS1
Human Protein AtlasENSG00000240541-TM4SF1-AS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TM4SF1-AS1
Human Protein Atlas [tissue]ENSG00000240541-TM4SF1-AS1 [tissue]
Protein Interaction databases
Ontologies - Pathways
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:25:38 CEST 2021

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