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TM4SF18 (transmembrane 4 L six family member 18)

Identity

Alias (NCBI)L6D
HGNC (Hugo) TM4SF18
HGNC Alias symbL6D
LocusID (NCBI) 116441
Atlas_Id 58317
Location 3q25.1  [Link to chromosome band 3q25]
Location_base_pair Starts at 149318498 and ends at 149333636 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TM4SF18   25181
Cards
Entrez_Gene (NCBI)TM4SF18    transmembrane 4 L six family member 18
AliasesL6D
GeneCards (Weizmann)TM4SF18
Ensembl hg19 (Hinxton)ENSG00000163762 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163762 [Gene_View]  ENSG00000163762 [Sequence]  chr3:149318498-149333636 [Contig_View]  TM4SF18 [Vega]
ICGC DataPortalENSG00000163762
TCGA cBioPortalTM4SF18
AceView (NCBI)TM4SF18
Genatlas (Paris)TM4SF18
SOURCE (Princeton)TM4SF18
Genetics Home Reference (NIH)TM4SF18
Genomic and cartography
GoldenPath hg38 (UCSC)TM4SF18  -     chr3:149318498-149333636 -  3q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TM4SF18  -     3q25.1   [Description]    (hg19-Feb_2009)
GoldenPathTM4SF18 - 3q25.1 [CytoView hg19]  TM4SF18 - 3q25.1 [CytoView hg38]
ImmunoBaseENSG00000163762
Genome Data Viewer NCBITM4SF18 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK092282 AK313400 AL833134 BC014339 BF213446
RefSeq transcript (Entrez)NM_001184723 NM_138786
Consensus coding sequences : CCDS (NCBI)TM4SF18
Gene ExpressionTM4SF18 [ NCBI-GEO ]   TM4SF18 [ EBI - ARRAY_EXPRESS ]   TM4SF18 [ SEEK ]   TM4SF18 [ MEM ]
Gene Expression Viewer (FireBrowse)TM4SF18 [ Firebrowse - Broad ]
GenevisibleExpression of TM4SF18 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)116441
GTEX Portal (Tissue expression)TM4SF18
Human Protein AtlasENSG00000163762-TM4SF18 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96CE8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96CE8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96CE8
PhosPhoSitePlusQ96CE8
Domains : Interpro (EBI)L6_membrane   
Domain families : Pfam (Sanger)L6_membrane (PF05805)   
Domain families : Pfam (NCBI)pfam05805   
Conserved Domain (NCBI)TM4SF18
SuperfamilyQ96CE8
AlphaFold pdb e-kbQ96CE8   
Human Protein Atlas [tissue]ENSG00000163762-TM4SF18 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q96CE8
IntAct (EBI)Q96CE8
BioGRIDTM4SF18
STRING (EMBL)TM4SF18
ZODIACTM4SF18
Ontologies - Pathways
QuickGOQ96CE8
Ontology : AmiGOprotein binding  integral component of membrane  
Ontology : EGO-EBIprotein binding  integral component of membrane  
NDEx NetworkTM4SF18
Atlas of Cancer Signalling NetworkTM4SF18
Wikipedia pathwaysTM4SF18
Orthology - Evolution
OrthoDB116441
GeneTree (enSembl)ENSG00000163762
Phylogenetic Trees/Animal Genes : TreeFamTM4SF18
Homologs : HomoloGeneTM4SF18
Homology/Alignments : Family Browser (UCSC)TM4SF18
Gene fusions - Rearrangements
Fusion : QuiverTM4SF18
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTM4SF18 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TM4SF18
dbVarTM4SF18
ClinVarTM4SF18
MonarchTM4SF18
1000_GenomesTM4SF18 
Exome Variant ServerTM4SF18
GNOMAD BrowserENSG00000163762
Varsome BrowserTM4SF18
ACMGTM4SF18 variants
VarityQ96CE8
Genomic Variants (DGV)TM4SF18 [DGVbeta]
DECIPHERTM4SF18 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTM4SF18 
Mutations
ICGC Data PortalTM4SF18 
TCGA Data PortalTM4SF18 
Broad Tumor PortalTM4SF18
OASIS PortalTM4SF18 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTM4SF18  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTM4SF18
Mutations and Diseases : HGMDTM4SF18
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTM4SF18
DgiDB (Drug Gene Interaction Database)TM4SF18
DoCM (Curated mutations)TM4SF18
CIViC (Clinical Interpretations of Variants in Cancer)TM4SF18
Cancer3DTM4SF18
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTM4SF18
MedgenTM4SF18
Genetic Testing Registry TM4SF18
NextProtQ96CE8 [Medical]
GENETestsTM4SF18
Target ValidationTM4SF18
Huge Navigator TM4SF18 [HugePedia]
ClinGenTM4SF18
Clinical trials, drugs, therapy
MyCancerGenomeTM4SF18
Protein Interactions : CTDTM4SF18
PharosQ96CE8
Clinical trialTM4SF18
Miscellaneous
canSAR (ICR)TM4SF18
HarmonizomeTM4SF18
DataMed IndexTM4SF18
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTM4SF18
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:35:16 CEST 2021

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