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TM4SF18 (transmembrane 4 L six family member 18)

Identity

Alias_symbol (synonym)L6D
Other alias
HGNC (Hugo) TM4SF18
LocusID (NCBI) 116441
Atlas_Id 74730
Location 3q25.1  [Link to chromosome band 3q25]
Location_base_pair Starts at 149318498 and ends at 149333472 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TM4SF18   25181
Cards
Entrez_Gene (NCBI)TM4SF18  116441  transmembrane 4 L six family member 18
AliasesL6D
GeneCards (Weizmann)TM4SF18
Ensembl hg19 (Hinxton)ENSG00000163762 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163762 [Gene_View]  chr3:149318498-149333472 [Contig_View]  TM4SF18 [Vega]
ICGC DataPortalENSG00000163762
TCGA cBioPortalTM4SF18
AceView (NCBI)TM4SF18
Genatlas (Paris)TM4SF18
WikiGenes116441
SOURCE (Princeton)TM4SF18
Genetics Home Reference (NIH)TM4SF18
Genomic and cartography
GoldenPath hg38 (UCSC)TM4SF18  -     chr3:149318498-149333472 -  3q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TM4SF18  -     3q25.1   [Description]    (hg19-Feb_2009)
EnsemblTM4SF18 - 3q25.1 [CytoView hg19]  TM4SF18 - 3q25.1 [CytoView hg38]
Mapping of homologs : NCBITM4SF18 [Mapview hg19]  TM4SF18 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK092282 AK313400 AL833134 BC014339 BF213446
RefSeq transcript (Entrez)NM_001184723 NM_138786
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TM4SF18
Cluster EST : UnigeneHs.22026 [ NCBI ]
CGAP (NCI)Hs.22026
Alternative Splicing GalleryENSG00000163762
Gene ExpressionTM4SF18 [ NCBI-GEO ]   TM4SF18 [ EBI - ARRAY_EXPRESS ]   TM4SF18 [ SEEK ]   TM4SF18 [ MEM ]
Gene Expression Viewer (FireBrowse)TM4SF18 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)116441
GTEX Portal (Tissue expression)TM4SF18
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96CE8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96CE8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96CE8
Splice isoforms : SwissVarQ96CE8
PhosPhoSitePlusQ96CE8
Domains : Interpro (EBI)L6_membrane   
Domain families : Pfam (Sanger)L6_membrane (PF05805)   
Domain families : Pfam (NCBI)pfam05805   
Conserved Domain (NCBI)TM4SF18
DMDM Disease mutations116441
Blocks (Seattle)TM4SF18
SuperfamilyQ96CE8
Human Protein AtlasENSG00000163762
Peptide AtlasQ96CE8
HPRD14018
IPIIPI00060412   IPI00945821   
Protein Interaction databases
DIP (DOE-UCLA)Q96CE8
IntAct (EBI)Q96CE8
FunCoupENSG00000163762
BioGRIDTM4SF18
STRING (EMBL)TM4SF18
ZODIACTM4SF18
Ontologies - Pathways
QuickGOQ96CE8
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkTM4SF18
Atlas of Cancer Signalling NetworkTM4SF18
Wikipedia pathwaysTM4SF18
Orthology - Evolution
OrthoDB116441
GeneTree (enSembl)ENSG00000163762
Phylogenetic Trees/Animal Genes : TreeFamTM4SF18
HOVERGENQ96CE8
HOGENOMQ96CE8
Homologs : HomoloGeneTM4SF18
Homology/Alignments : Family Browser (UCSC)TM4SF18
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTM4SF18 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TM4SF18
dbVarTM4SF18
ClinVarTM4SF18
1000_GenomesTM4SF18 
Exome Variant ServerTM4SF18
ExAC (Exome Aggregation Consortium)TM4SF18 (select the gene name)
Genetic variants : HAPMAP116441
Genomic Variants (DGV)TM4SF18 [DGVbeta]
DECIPHERTM4SF18 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTM4SF18 
Mutations
ICGC Data PortalTM4SF18 
TCGA Data PortalTM4SF18 
Broad Tumor PortalTM4SF18
OASIS PortalTM4SF18 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTM4SF18  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTM4SF18
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TM4SF18
DgiDB (Drug Gene Interaction Database)TM4SF18
DoCM (Curated mutations)TM4SF18 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TM4SF18 (select a term)
intoGenTM4SF18
Cancer3DTM4SF18(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTM4SF18
Genetic Testing Registry TM4SF18
NextProtQ96CE8 [Medical]
TSGene116441
GENETestsTM4SF18
Target ValidationTM4SF18
Huge Navigator TM4SF18 [HugePedia]
snp3D : Map Gene to Disease116441
BioCentury BCIQTM4SF18
ClinGenTM4SF18
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD116441
Chemical/Pharm GKB GenePA142670801
Clinical trialTM4SF18
Miscellaneous
canSAR (ICR)TM4SF18 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTM4SF18
EVEXTM4SF18
GoPubMedTM4SF18
iHOPTM4SF18
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:45:38 CEST 2017

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