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TM4SF19-AS1 (TM4SF19 antisense RNA 1)

Identity

Alias_namesTM4SF19 antisense RNA 1 (non-protein coding)
Other alias-
HGNC (Hugo) TM4SF19-AS1
LocusID (NCBI) 100874214
Atlas_Id 74732
Location 3q29  [Link to chromosome band 3q29]
Location_base_pair Starts at 196318332 and ends at 196325570 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TM4SF19-AS1   41085
Cards
Entrez_Gene (NCBI)TM4SF19-AS1  100874214  TM4SF19 antisense RNA 1
Aliases
GeneCards (Weizmann)TM4SF19-AS1
Ensembl hg19 (Hinxton)ENSG00000235897 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000235897 [Gene_View]  chr3:196318332-196325570 [Contig_View]  TM4SF19-AS1 [Vega]
ICGC DataPortalENSG00000235897
TCGA cBioPortalTM4SF19-AS1
AceView (NCBI)TM4SF19-AS1
Genatlas (Paris)TM4SF19-AS1
WikiGenes100874214
SOURCE (Princeton)TM4SF19-AS1
Genetics Home Reference (NIH)TM4SF19-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)TM4SF19-AS1  -     chr3:196318332-196325570 +  3q29   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TM4SF19-AS1  -     3q29   [Description]    (hg19-Feb_2009)
EnsemblTM4SF19-AS1 - 3q29 [CytoView hg19]  TM4SF19-AS1 - 3q29 [CytoView hg38]
Mapping of homologs : NCBITM4SF19-AS1 [Mapview hg19]  TM4SF19-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK124973 CK819994
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TM4SF19-AS1
Cluster EST : UnigeneHs.672105 [ NCBI ]
CGAP (NCI)Hs.672105
Alternative Splicing GalleryENSG00000235897
Gene ExpressionTM4SF19-AS1 [ NCBI-GEO ]   TM4SF19-AS1 [ EBI - ARRAY_EXPRESS ]   TM4SF19-AS1 [ SEEK ]   TM4SF19-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)TM4SF19-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100874214
GTEX Portal (Tissue expression)TM4SF19-AS1
Human Protein AtlasENSG00000235897-TM4SF19-AS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TM4SF19-AS1
DMDM Disease mutations100874214
Blocks (Seattle)TM4SF19-AS1
Human Protein Atlas [tissue]ENSG00000235897-TM4SF19-AS1 [tissue]
Protein Interaction databases
FunCoupENSG00000235897
BioGRIDTM4SF19-AS1
STRING (EMBL)TM4SF19-AS1
ZODIACTM4SF19-AS1
Ontologies - Pathways
Huge Navigator TM4SF19-AS1 [HugePedia]
snp3D : Map Gene to Disease100874214
BioCentury BCIQTM4SF19-AS1
ClinGenTM4SF19-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100874214
Clinical trialTM4SF19-AS1
Miscellaneous
canSAR (ICR)TM4SF19-AS1 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineTM4SF19-AS1
EVEXTM4SF19-AS1
GoPubMedTM4SF19-AS1
iHOPTM4SF19-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:09:13 CET 2017

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