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TM4SF19 (transmembrane 4 L six family member 19)

Identity

Other aliasOCTM4
HGNC (Hugo) TM4SF19
LocusID (NCBI) 116211
Atlas_Id 74731
Location 3q29  [Link to chromosome band 3q29]
Location_base_pair Starts at 196323546 and ends at 196338420 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TM4SF19 (3q29) / BAZ2A (12q13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TM4SF19   25167
Cards
Entrez_Gene (NCBI)TM4SF19  116211  transmembrane 4 L six family member 19
AliasesOCTM4
GeneCards (Weizmann)TM4SF19
Ensembl hg19 (Hinxton)ENSG00000145107 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000145107 [Gene_View]  chr3:196323546-196338420 [Contig_View]  TM4SF19 [Vega]
ICGC DataPortalENSG00000145107
TCGA cBioPortalTM4SF19
AceView (NCBI)TM4SF19
Genatlas (Paris)TM4SF19
WikiGenes116211
SOURCE (Princeton)TM4SF19
Genetics Home Reference (NIH)TM4SF19
Genomic and cartography
GoldenPath hg38 (UCSC)TM4SF19  -     chr3:196323546-196338420 -  3q29   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TM4SF19  -     3q29   [Description]    (hg19-Feb_2009)
EnsemblTM4SF19 - 3q29 [CytoView hg19]  TM4SF19 - 3q29 [CytoView hg38]
Mapping of homologs : NCBITM4SF19 [Mapview hg19]  TM4SF19 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF192910 AK310209 BC146985 BC146993 BC147021
RefSeq transcript (Entrez)NM_001204897 NM_001204898 NM_138461
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TM4SF19
Cluster EST : UnigeneHs.733264 [ NCBI ]
CGAP (NCI)Hs.733264
Alternative Splicing GalleryENSG00000145107
Gene ExpressionTM4SF19 [ NCBI-GEO ]   TM4SF19 [ EBI - ARRAY_EXPRESS ]   TM4SF19 [ SEEK ]   TM4SF19 [ MEM ]
Gene Expression Viewer (FireBrowse)TM4SF19 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)116211
GTEX Portal (Tissue expression)TM4SF19
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96DZ7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96DZ7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96DZ7
Splice isoforms : SwissVarQ96DZ7
PhosPhoSitePlusQ96DZ7
Domains : Interpro (EBI)L6_membrane   
Domain families : Pfam (Sanger)L6_membrane (PF05805)   
Domain families : Pfam (NCBI)pfam05805   
Conserved Domain (NCBI)TM4SF19
DMDM Disease mutations116211
Blocks (Seattle)TM4SF19
SuperfamilyQ96DZ7
Human Protein AtlasENSG00000145107
Peptide AtlasQ96DZ7
HPRD14013
IPIIPI00061285   IPI00925174   IPI00922857   IPI00925768   
Protein Interaction databases
DIP (DOE-UCLA)Q96DZ7
IntAct (EBI)Q96DZ7
FunCoupENSG00000145107
BioGRIDTM4SF19
STRING (EMBL)TM4SF19
ZODIACTM4SF19
Ontologies - Pathways
QuickGOQ96DZ7
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkTM4SF19
Atlas of Cancer Signalling NetworkTM4SF19
Wikipedia pathwaysTM4SF19
Orthology - Evolution
OrthoDB116211
GeneTree (enSembl)ENSG00000145107
Phylogenetic Trees/Animal Genes : TreeFamTM4SF19
HOVERGENQ96DZ7
HOGENOMQ96DZ7
Homologs : HomoloGeneTM4SF19
Homology/Alignments : Family Browser (UCSC)TM4SF19
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTM4SF19 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TM4SF19
dbVarTM4SF19
ClinVarTM4SF19
1000_GenomesTM4SF19 
Exome Variant ServerTM4SF19
ExAC (Exome Aggregation Consortium)TM4SF19 (select the gene name)
Genetic variants : HAPMAP116211
Genomic Variants (DGV)TM4SF19 [DGVbeta]
DECIPHERTM4SF19 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTM4SF19 
Mutations
ICGC Data PortalTM4SF19 
TCGA Data PortalTM4SF19 
Broad Tumor PortalTM4SF19
OASIS PortalTM4SF19 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTM4SF19  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTM4SF19
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TM4SF19
DgiDB (Drug Gene Interaction Database)TM4SF19
DoCM (Curated mutations)TM4SF19 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TM4SF19 (select a term)
intoGenTM4SF19
Cancer3DTM4SF19(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTM4SF19
Genetic Testing Registry TM4SF19
NextProtQ96DZ7 [Medical]
TSGene116211
GENETestsTM4SF19
Target ValidationTM4SF19
Huge Navigator TM4SF19 [HugePedia]
snp3D : Map Gene to Disease116211
BioCentury BCIQTM4SF19
ClinGenTM4SF19
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD116211
Chemical/Pharm GKB GenePA142670802
Clinical trialTM4SF19
Miscellaneous
canSAR (ICR)TM4SF19 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTM4SF19
EVEXTM4SF19
GoPubMedTM4SF19
iHOPTM4SF19
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:41:31 CEST 2017

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