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TM4SF20 (transmembrane 4 L six family member 20)

Identity

Alias_symbol (synonym)FLJ22800
TCCE518
Other aliasPRO994
SLI5
HGNC (Hugo) TM4SF20
LocusID (NCBI) 79853
Atlas_Id 55911
Location 2q36.3  [Link to chromosome band 2q36]
Location_base_pair Starts at 227362038 and ends at 227379306 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TM4SF20   26230
Cards
Entrez_Gene (NCBI)TM4SF20  79853  transmembrane 4 L six family member 20
AliasesPRO994; SLI5; TCCE518
GeneCards (Weizmann)TM4SF20
Ensembl hg19 (Hinxton)ENSG00000168955 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000168955 [Gene_View]  chr2:227362038-227379306 [Contig_View]  TM4SF20 [Vega]
ICGC DataPortalENSG00000168955
TCGA cBioPortalTM4SF20
AceView (NCBI)TM4SF20
Genatlas (Paris)TM4SF20
WikiGenes79853
SOURCE (Princeton)TM4SF20
Genetics Home Reference (NIH)TM4SF20
Genomic and cartography
GoldenPath hg38 (UCSC)TM4SF20  -     chr2:227362038-227379306 -  2q36.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TM4SF20  -     2q36.3   [Description]    (hg19-Feb_2009)
EnsemblTM4SF20 - 2q36.3 [CytoView hg19]  TM4SF20 - 2q36.3 [CytoView hg38]
Mapping of homologs : NCBITM4SF20 [Mapview hg19]  TM4SF20 [Mapview hg38]
OMIM615404   615432   
Gene and transcription
Genbank (Entrez)AK026453 AY358671 BC035754 BC137256 BC137257
RefSeq transcript (Entrez)NM_024795
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TM4SF20
Cluster EST : UnigeneHs.156652 [ NCBI ]
CGAP (NCI)Hs.156652
Alternative Splicing GalleryENSG00000168955
Gene ExpressionTM4SF20 [ NCBI-GEO ]   TM4SF20 [ EBI - ARRAY_EXPRESS ]   TM4SF20 [ SEEK ]   TM4SF20 [ MEM ]
Gene Expression Viewer (FireBrowse)TM4SF20 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79853
GTEX Portal (Tissue expression)TM4SF20
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ53R12   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ53R12  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ53R12
Splice isoforms : SwissVarQ53R12
PhosPhoSitePlusQ53R12
Domains : Interpro (EBI)L6_membrane   
Domain families : Pfam (Sanger)L6_membrane (PF05805)   
Domain families : Pfam (NCBI)pfam05805   
Conserved Domain (NCBI)TM4SF20
DMDM Disease mutations79853
Blocks (Seattle)TM4SF20
SuperfamilyQ53R12
Human Protein AtlasENSG00000168955
Peptide AtlasQ53R12
HPRD08008
IPIIPI00015659   IPI00917591   
Protein Interaction databases
DIP (DOE-UCLA)Q53R12
IntAct (EBI)Q53R12
FunCoupENSG00000168955
BioGRIDTM4SF20
STRING (EMBL)TM4SF20
ZODIACTM4SF20
Ontologies - Pathways
QuickGOQ53R12
Ontology : AmiGOendoplasmic reticulum membrane  plasma membrane  focal adhesion  integral component of membrane  negative regulation of proteolysis  
Ontology : EGO-EBIendoplasmic reticulum membrane  plasma membrane  focal adhesion  integral component of membrane  negative regulation of proteolysis  
NDEx NetworkTM4SF20
Atlas of Cancer Signalling NetworkTM4SF20
Wikipedia pathwaysTM4SF20
Orthology - Evolution
OrthoDB79853
GeneTree (enSembl)ENSG00000168955
Phylogenetic Trees/Animal Genes : TreeFamTM4SF20
HOVERGENQ53R12
HOGENOMQ53R12
Homologs : HomoloGeneTM4SF20
Homology/Alignments : Family Browser (UCSC)TM4SF20
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTM4SF20 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TM4SF20
dbVarTM4SF20
ClinVarTM4SF20
1000_GenomesTM4SF20 
Exome Variant ServerTM4SF20
ExAC (Exome Aggregation Consortium)TM4SF20 (select the gene name)
Genetic variants : HAPMAP79853
Genomic Variants (DGV)TM4SF20 [DGVbeta]
DECIPHERTM4SF20 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTM4SF20 
Mutations
ICGC Data PortalTM4SF20 
TCGA Data PortalTM4SF20 
Broad Tumor PortalTM4SF20
OASIS PortalTM4SF20 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTM4SF20  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTM4SF20
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TM4SF20
DgiDB (Drug Gene Interaction Database)TM4SF20
DoCM (Curated mutations)TM4SF20 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TM4SF20 (select a term)
intoGenTM4SF20
Cancer3DTM4SF20(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615404    615432   
Orphanet
MedgenTM4SF20
Genetic Testing Registry TM4SF20
NextProtQ53R12 [Medical]
TSGene79853
GENETestsTM4SF20
Target ValidationTM4SF20
Huge Navigator TM4SF20 [HugePedia]
snp3D : Map Gene to Disease79853
BioCentury BCIQTM4SF20
ClinGenTM4SF20
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79853
Chemical/Pharm GKB GenePA142670803
Clinical trialTM4SF20
Miscellaneous
canSAR (ICR)TM4SF20 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTM4SF20
EVEXTM4SF20
GoPubMedTM4SF20
iHOPTM4SF20
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:59:33 CEST 2017

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