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TM4SF4 (transmembrane 4 L six family member 4)

Identity

Alias (NCBI)ILTMP
il-TMP
HGNC (Hugo) TM4SF4
HGNC Alias symbil-TMP
HGNC Previous nametransmembrane 4 superfamily member 4
LocusID (NCBI) 7104
Atlas_Id 52647
Location 3q25.1  [Link to chromosome band 3q25]
Location_base_pair Starts at 149474697 and ends at 149503394 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
RNF13 (3q25.1) / TM4SF4 (3q25.1)TM4SF4 (3q25.1) / KCNIP3 (2q11.1)RNF13 3q25.1 / TM4SF4 3q25.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TM4SF4   11856
Cards
Entrez_Gene (NCBI)TM4SF4    transmembrane 4 L six family member 4
AliasesILTMP; il-TMP
GeneCards (Weizmann)TM4SF4
Ensembl hg19 (Hinxton)ENSG00000169903 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000169903 [Gene_View]  ENSG00000169903 [Sequence]  chr3:149474697-149503394 [Contig_View]  TM4SF4 [Vega]
ICGC DataPortalENSG00000169903
TCGA cBioPortalTM4SF4
AceView (NCBI)TM4SF4
Genatlas (Paris)TM4SF4
SOURCE (Princeton)TM4SF4
Genetics Home Reference (NIH)TM4SF4
Genomic and cartography
GoldenPath hg38 (UCSC)TM4SF4  -     chr3:149474697-149503394 +  3q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TM4SF4  -     3q25.1   [Description]    (hg19-Feb_2009)
GoldenPathTM4SF4 - 3q25.1 [CytoView hg19]  TM4SF4 - 3q25.1 [CytoView hg38]
ImmunoBaseENSG00000169903
Genome Data Viewer NCBITM4SF4 [Mapview hg19]  
OMIM606567   
Gene and transcription
Genbank (Entrez)AK055577 AK315464 BC001386 BG656032 BP294159
RefSeq transcript (Entrez)NM_004617
Consensus coding sequences : CCDS (NCBI)TM4SF4
Gene ExpressionTM4SF4 [ NCBI-GEO ]   TM4SF4 [ EBI - ARRAY_EXPRESS ]   TM4SF4 [ SEEK ]   TM4SF4 [ MEM ]
Gene Expression Viewer (FireBrowse)TM4SF4 [ Firebrowse - Broad ]
GenevisibleExpression of TM4SF4 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7104
GTEX Portal (Tissue expression)TM4SF4
Human Protein AtlasENSG00000169903-TM4SF4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP48230   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP48230  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP48230
PhosPhoSitePlusP48230
Domains : Interpro (EBI)L6_membrane   
Domain families : Pfam (Sanger)L6_membrane (PF05805)   
Domain families : Pfam (NCBI)pfam05805   
Conserved Domain (NCBI)TM4SF4
SuperfamilyP48230
AlphaFold pdb e-kbP48230   
Human Protein Atlas [tissue]ENSG00000169903-TM4SF4 [tissue]
HPRD07585
Protein Interaction databases
DIP (DOE-UCLA)P48230
IntAct (EBI)P48230
BioGRIDTM4SF4
STRING (EMBL)TM4SF4
ZODIACTM4SF4
Ontologies - Pathways
QuickGOP48230
Ontology : AmiGOprotein binding  integral component of membrane  tissue regeneration  
Ontology : EGO-EBIprotein binding  integral component of membrane  tissue regeneration  
NDEx NetworkTM4SF4
Atlas of Cancer Signalling NetworkTM4SF4
Wikipedia pathwaysTM4SF4
Orthology - Evolution
OrthoDB7104
GeneTree (enSembl)ENSG00000169903
Phylogenetic Trees/Animal Genes : TreeFamTM4SF4
Homologs : HomoloGeneTM4SF4
Homology/Alignments : Family Browser (UCSC)TM4SF4
Gene fusions - Rearrangements
Fusion : MitelmanRNF13/TM4SF4 [3q25.1/3q25.1]  
Fusion : QuiverTM4SF4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTM4SF4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TM4SF4
dbVarTM4SF4
ClinVarTM4SF4
MonarchTM4SF4
1000_GenomesTM4SF4 
Exome Variant ServerTM4SF4
GNOMAD BrowserENSG00000169903
Varsome BrowserTM4SF4
ACMGTM4SF4 variants
VarityP48230
Genomic Variants (DGV)TM4SF4 [DGVbeta]
DECIPHERTM4SF4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTM4SF4 
Mutations
ICGC Data PortalTM4SF4 
TCGA Data PortalTM4SF4 
Broad Tumor PortalTM4SF4
OASIS PortalTM4SF4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTM4SF4  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTM4SF4
Mutations and Diseases : HGMDTM4SF4
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTM4SF4
DgiDB (Drug Gene Interaction Database)TM4SF4
DoCM (Curated mutations)TM4SF4
CIViC (Clinical Interpretations of Variants in Cancer)TM4SF4
Cancer3DTM4SF4
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606567   
Orphanet
DisGeNETTM4SF4
MedgenTM4SF4
Genetic Testing Registry TM4SF4
NextProtP48230 [Medical]
GENETestsTM4SF4
Target ValidationTM4SF4
Huge Navigator TM4SF4 [HugePedia]
ClinGenTM4SF4
Clinical trials, drugs, therapy
MyCancerGenomeTM4SF4
Protein Interactions : CTDTM4SF4
Pharm GKB GenePA36557
PharosP48230
Clinical trialTM4SF4
Miscellaneous
canSAR (ICR)TM4SF4
HarmonizomeTM4SF4
DataMed IndexTM4SF4
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTM4SF4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:35:17 CEST 2021

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