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TM4SF4 (transmembrane 4 L six family member 4)

Identity

Alias_namestransmembrane 4 superfamily member 4
Alias_symbol (synonym)il-TMP
Other aliasILTMP
HGNC (Hugo) TM4SF4
LocusID (NCBI) 7104
Atlas_Id 52647
Location 3q25.1  [Link to chromosome band 3q25]
Location_base_pair Starts at 149474581 and ends at 149503394 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RNF13 (3q25.1) / TM4SF4 (3q25.1)TM4SF4 (3q25.1) / KCNIP3 (2q11.1)RNF13 3q25.1 / TM4SF4 3q25.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TM4SF4   11856
Cards
Entrez_Gene (NCBI)TM4SF4  7104  transmembrane 4 L six family member 4
AliasesILTMP; il-TMP
GeneCards (Weizmann)TM4SF4
Ensembl hg19 (Hinxton)ENSG00000169903 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000169903 [Gene_View]  chr3:149474581-149503394 [Contig_View]  TM4SF4 [Vega]
ICGC DataPortalENSG00000169903
TCGA cBioPortalTM4SF4
AceView (NCBI)TM4SF4
Genatlas (Paris)TM4SF4
WikiGenes7104
SOURCE (Princeton)TM4SF4
Genetics Home Reference (NIH)TM4SF4
Genomic and cartography
GoldenPath hg38 (UCSC)TM4SF4  -     chr3:149474581-149503394 +  3q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TM4SF4  -     3q25.1   [Description]    (hg19-Feb_2009)
EnsemblTM4SF4 - 3q25.1 [CytoView hg19]  TM4SF4 - 3q25.1 [CytoView hg38]
Mapping of homologs : NCBITM4SF4 [Mapview hg19]  TM4SF4 [Mapview hg38]
OMIM606567   
Gene and transcription
Genbank (Entrez)AK055577 AK315464 BC001386 BG656032 BP294159
RefSeq transcript (Entrez)NM_004617
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TM4SF4
Cluster EST : UnigeneHs.133527 [ NCBI ]
CGAP (NCI)Hs.133527
Alternative Splicing GalleryENSG00000169903
Gene ExpressionTM4SF4 [ NCBI-GEO ]   TM4SF4 [ EBI - ARRAY_EXPRESS ]   TM4SF4 [ SEEK ]   TM4SF4 [ MEM ]
Gene Expression Viewer (FireBrowse)TM4SF4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7104
GTEX Portal (Tissue expression)TM4SF4
Protein : pattern, domain, 3D structure
UniProt/SwissProtP48230   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP48230  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP48230
Splice isoforms : SwissVarP48230
PhosPhoSitePlusP48230
Domains : Interpro (EBI)L6_membrane   
Domain families : Pfam (Sanger)L6_membrane (PF05805)   
Domain families : Pfam (NCBI)pfam05805   
Conserved Domain (NCBI)TM4SF4
DMDM Disease mutations7104
Blocks (Seattle)TM4SF4
SuperfamilyP48230
Human Protein AtlasENSG00000169903
Peptide AtlasP48230
HPRD07585
IPIIPI00008779   IPI00788858   
Protein Interaction databases
DIP (DOE-UCLA)P48230
IntAct (EBI)P48230
FunCoupENSG00000169903
BioGRIDTM4SF4
STRING (EMBL)TM4SF4
ZODIACTM4SF4
Ontologies - Pathways
QuickGOP48230
Ontology : AmiGOprotein binding  integral component of membrane  tissue regeneration  
Ontology : EGO-EBIprotein binding  integral component of membrane  tissue regeneration  
NDEx NetworkTM4SF4
Atlas of Cancer Signalling NetworkTM4SF4
Wikipedia pathwaysTM4SF4
Orthology - Evolution
OrthoDB7104
GeneTree (enSembl)ENSG00000169903
Phylogenetic Trees/Animal Genes : TreeFamTM4SF4
HOVERGENP48230
HOGENOMP48230
Homologs : HomoloGeneTM4SF4
Homology/Alignments : Family Browser (UCSC)TM4SF4
Gene fusions - Rearrangements
Fusion : MitelmanRNF13/TM4SF4 [3q25.1/3q25.1]  [t(3;3)(q25;q25)]  
Fusion: TCGARNF13 3q25.1 TM4SF4 3q25.1 BRCA OV
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTM4SF4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TM4SF4
dbVarTM4SF4
ClinVarTM4SF4
1000_GenomesTM4SF4 
Exome Variant ServerTM4SF4
ExAC (Exome Aggregation Consortium)TM4SF4 (select the gene name)
Genetic variants : HAPMAP7104
Genomic Variants (DGV)TM4SF4 [DGVbeta]
DECIPHERTM4SF4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTM4SF4 
Mutations
ICGC Data PortalTM4SF4 
TCGA Data PortalTM4SF4 
Broad Tumor PortalTM4SF4
OASIS PortalTM4SF4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTM4SF4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTM4SF4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TM4SF4
DgiDB (Drug Gene Interaction Database)TM4SF4
DoCM (Curated mutations)TM4SF4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TM4SF4 (select a term)
intoGenTM4SF4
Cancer3DTM4SF4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606567   
Orphanet
MedgenTM4SF4
Genetic Testing Registry TM4SF4
NextProtP48230 [Medical]
TSGene7104
GENETestsTM4SF4
Target ValidationTM4SF4
Huge Navigator TM4SF4 [HugePedia]
snp3D : Map Gene to Disease7104
BioCentury BCIQTM4SF4
ClinGenTM4SF4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7104
Chemical/Pharm GKB GenePA36557
Clinical trialTM4SF4
Miscellaneous
canSAR (ICR)TM4SF4 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTM4SF4
EVEXTM4SF4
GoPubMedTM4SF4
iHOPTM4SF4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:17:01 CEST 2017

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