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TM4SF5 (transmembrane 4 L six family member 5)

Identity

Alias_namestransmembrane 4 superfamily member 5
Other alias-
HGNC (Hugo) TM4SF5
LocusID (NCBI) 9032
Atlas_Id 42586
Location 17p13.2  [Link to chromosome band 17p13]
Location_base_pair Starts at 4675187 and ends at 4686506 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TM4SF5   11857
Cards
Entrez_Gene (NCBI)TM4SF5  9032  transmembrane 4 L six family member 5
Aliases
GeneCards (Weizmann)TM4SF5
Ensembl hg19 (Hinxton)ENSG00000142484 [Gene_View]  chr17:4675187-4686506 [Contig_View]  TM4SF5 [Vega]
Ensembl hg38 (Hinxton)ENSG00000142484 [Gene_View]  chr17:4675187-4686506 [Contig_View]  TM4SF5 [Vega]
ICGC DataPortalENSG00000142484
TCGA cBioPortalTM4SF5
AceView (NCBI)TM4SF5
Genatlas (Paris)TM4SF5
WikiGenes9032
SOURCE (Princeton)TM4SF5
Genetics Home Reference (NIH)TM4SF5
Genomic and cartography
GoldenPath hg19 (UCSC)TM4SF5  -     chr17:4675187-4686506 +  17p13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TM4SF5  -     17p13.2   [Description]    (hg38-Dec_2013)
EnsemblTM4SF5 - 17p13.2 [CytoView hg19]  TM4SF5 - 17p13.2 [CytoView hg38]
Mapping of homologs : NCBITM4SF5 [Mapview hg19]  TM4SF5 [Mapview hg38]
OMIM604657   
Gene and transcription
Genbank (Entrez)AF027204 BC069519 BC093688 BC117163 CR456925
RefSeq transcript (Entrez)NM_003963
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010718 NW_004929405
Consensus coding sequences : CCDS (NCBI)TM4SF5
Cluster EST : UnigeneHs.184194 [ NCBI ]
CGAP (NCI)Hs.184194
Alternative Splicing GalleryENSG00000142484
Gene ExpressionTM4SF5 [ NCBI-GEO ]   TM4SF5 [ EBI - ARRAY_EXPRESS ]   TM4SF5 [ SEEK ]   TM4SF5 [ MEM ]
Gene Expression Viewer (FireBrowse)TM4SF5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9032
GTEX Portal (Tissue expression)TM4SF5
Protein : pattern, domain, 3D structure
UniProt/SwissProtO14894   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO14894  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO14894
Splice isoforms : SwissVarO14894
PhosPhoSitePlusO14894
Domains : Interpro (EBI)L6_membrane   
Domain families : Pfam (Sanger)L6_membrane (PF05805)   
Domain families : Pfam (NCBI)pfam05805   
Conserved Domain (NCBI)TM4SF5
DMDM Disease mutations9032
Blocks (Seattle)TM4SF5
SuperfamilyO14894
Human Protein AtlasENSG00000142484
Peptide AtlasO14894
HPRD06877
IPIIPI00024287   
Protein Interaction databases
DIP (DOE-UCLA)O14894
IntAct (EBI)O14894
FunCoupENSG00000142484
BioGRIDTM4SF5
STRING (EMBL)TM4SF5
ZODIACTM4SF5
Ontologies - Pathways
QuickGOO14894
Ontology : AmiGOintegral component of plasma membrane  
Ontology : EGO-EBIintegral component of plasma membrane  
NDEx NetworkTM4SF5
Atlas of Cancer Signalling NetworkTM4SF5
Wikipedia pathwaysTM4SF5
Orthology - Evolution
OrthoDB9032
GeneTree (enSembl)ENSG00000142484
Phylogenetic Trees/Animal Genes : TreeFamTM4SF5
HOVERGENO14894
HOGENOMO14894
Homologs : HomoloGeneTM4SF5
Homology/Alignments : Family Browser (UCSC)TM4SF5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTM4SF5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TM4SF5
dbVarTM4SF5
ClinVarTM4SF5
1000_GenomesTM4SF5 
Exome Variant ServerTM4SF5
ExAC (Exome Aggregation Consortium)TM4SF5 (select the gene name)
Genetic variants : HAPMAP9032
Genomic Variants (DGV)TM4SF5 [DGVbeta]
DECIPHER (Syndromes)17:4675187-4686506  ENSG00000142484
CONAN: Copy Number AnalysisTM4SF5 
Mutations
ICGC Data PortalTM4SF5 
TCGA Data PortalTM4SF5 
Broad Tumor PortalTM4SF5
OASIS PortalTM4SF5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTM4SF5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTM4SF5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TM4SF5
DgiDB (Drug Gene Interaction Database)TM4SF5
DoCM (Curated mutations)TM4SF5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TM4SF5 (select a term)
intoGenTM4SF5
Cancer3DTM4SF5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604657   
Orphanet
MedgenTM4SF5
Genetic Testing Registry TM4SF5
NextProtO14894 [Medical]
TSGene9032
GENETestsTM4SF5
Huge Navigator TM4SF5 [HugePedia]
snp3D : Map Gene to Disease9032
BioCentury BCIQTM4SF5
ClinGenTM4SF5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9032
Chemical/Pharm GKB GenePA36558
Clinical trialTM4SF5
Miscellaneous
canSAR (ICR)TM4SF5 (select the gene name)
Probes
Litterature
PubMed30 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTM4SF5
EVEXTM4SF5
GoPubMedTM4SF5
iHOPTM4SF5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:22:36 CEST 2017

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