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TM6SF1 (transmembrane 6 superfamily member 1)

Identity

Other alias-
HGNC (Hugo) TM6SF1
LocusID (NCBI) 53346
Atlas_Id 55226
Location 15q25.2  [Link to chromosome band 15q25]
Location_base_pair Starts at 83776324 and ends at 83806111 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
SCAPER (15q24.3) / TM6SF1 (15q25.2)TM6SF1 (15q25.2) / LSAMP (3q13.31)TM6SF1 (15q25.2) / NFIC (19p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TM6SF1   11860
Cards
Entrez_Gene (NCBI)TM6SF1  53346  transmembrane 6 superfamily member 1
Aliases
GeneCards (Weizmann)TM6SF1
Ensembl hg19 (Hinxton)ENSG00000136404 [Gene_View]  chr15:83776324-83806111 [Contig_View]  TM6SF1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000136404 [Gene_View]  chr15:83776324-83806111 [Contig_View]  TM6SF1 [Vega]
ICGC DataPortalENSG00000136404
TCGA cBioPortalTM6SF1
AceView (NCBI)TM6SF1
Genatlas (Paris)TM6SF1
WikiGenes53346
SOURCE (Princeton)TM6SF1
Genetics Home Reference (NIH)TM6SF1
Genomic and cartography
GoldenPath hg19 (UCSC)TM6SF1  -     chr15:83776324-83806111 +  15q25.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TM6SF1  -     15q25.2   [Description]    (hg38-Dec_2013)
EnsemblTM6SF1 - 15q25.2 [CytoView hg19]  TM6SF1 - 15q25.2 [CytoView hg38]
Mapping of homologs : NCBITM6SF1 [Mapview hg19]  TM6SF1 [Mapview hg38]
OMIM606562   
Gene and transcription
Genbank (Entrez)AF255922 AK223246 AK292100 AK295568 BC032007
RefSeq transcript (Entrez)NM_001144903 NM_023003
RefSeq genomic (Entrez)NC_000015 NC_018926 NT_010194 NW_004929398
Consensus coding sequences : CCDS (NCBI)TM6SF1
Cluster EST : UnigeneHs.513094 [ NCBI ]
CGAP (NCI)Hs.513094
Alternative Splicing GalleryENSG00000136404
Gene ExpressionTM6SF1 [ NCBI-GEO ]   TM6SF1 [ EBI - ARRAY_EXPRESS ]   TM6SF1 [ SEEK ]   TM6SF1 [ MEM ]
Gene Expression Viewer (FireBrowse)TM6SF1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)53346
GTEX Portal (Tissue expression)TM6SF1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BZW5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BZW5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BZW5
Splice isoforms : SwissVarQ9BZW5
PhosPhoSitePlusQ9BZW5
Domaine pattern : Prosite (Expaxy)EXPERA (PS51751)   
Domains : Interpro (EBI)EXPERA   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TM6SF1
DMDM Disease mutations53346
Blocks (Seattle)TM6SF1
SuperfamilyQ9BZW5
Human Protein AtlasENSG00000136404
Peptide AtlasQ9BZW5
HPRD08411
IPIIPI00011109   IPI00747931   IPI00440685   IPI00166882   IPI00640472   
Protein Interaction databases
DIP (DOE-UCLA)Q9BZW5
IntAct (EBI)Q9BZW5
FunCoupENSG00000136404
BioGRIDTM6SF1
STRING (EMBL)TM6SF1
ZODIACTM6SF1
Ontologies - Pathways
QuickGOQ9BZW5
Ontology : AmiGOmolecular_function  lysosomal membrane  biological_process  integral component of membrane  
Ontology : EGO-EBImolecular_function  lysosomal membrane  biological_process  integral component of membrane  
NDEx NetworkTM6SF1
Atlas of Cancer Signalling NetworkTM6SF1
Wikipedia pathwaysTM6SF1
Orthology - Evolution
OrthoDB53346
GeneTree (enSembl)ENSG00000136404
Phylogenetic Trees/Animal Genes : TreeFamTM6SF1
HOVERGENQ9BZW5
HOGENOMQ9BZW5
Homologs : HomoloGeneTM6SF1
Homology/Alignments : Family Browser (UCSC)TM6SF1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTM6SF1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TM6SF1
dbVarTM6SF1
ClinVarTM6SF1
1000_GenomesTM6SF1 
Exome Variant ServerTM6SF1
ExAC (Exome Aggregation Consortium)TM6SF1 (select the gene name)
Genetic variants : HAPMAP53346
Genomic Variants (DGV)TM6SF1 [DGVbeta]
DECIPHER (Syndromes)15:83776324-83806111  ENSG00000136404
CONAN: Copy Number AnalysisTM6SF1 
Mutations
ICGC Data PortalTM6SF1 
TCGA Data PortalTM6SF1 
Broad Tumor PortalTM6SF1
OASIS PortalTM6SF1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTM6SF1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTM6SF1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TM6SF1
DgiDB (Drug Gene Interaction Database)TM6SF1
DoCM (Curated mutations)TM6SF1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TM6SF1 (select a term)
intoGenTM6SF1
Cancer3DTM6SF1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606562   
Orphanet
MedgenTM6SF1
Genetic Testing Registry TM6SF1
NextProtQ9BZW5 [Medical]
TSGene53346
GENETestsTM6SF1
Huge Navigator TM6SF1 [HugePedia]
snp3D : Map Gene to Disease53346
BioCentury BCIQTM6SF1
ClinGenTM6SF1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD53346
Chemical/Pharm GKB GenePA36561
Clinical trialTM6SF1
Miscellaneous
canSAR (ICR)TM6SF1 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTM6SF1
EVEXTM6SF1
GoPubMedTM6SF1
iHOPTM6SF1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:31:18 CET 2017

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