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TM9SF1 (transmembrane 9 superfamily member 1)

Identity

Alias_symbol (synonym)MP70
HMP70
Other alias
HGNC (Hugo) TM9SF1
LocusID (NCBI) 10548
Atlas_Id 74739
Location 14q12  [Link to chromosome band 14q12]
Location_base_pair Starts at 24190038 and ends at 24195736 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CHMP4A (14q12) / TM9SF1 (14q12)TM9SF1 (14q12) / SEPN1 (1p36.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TM9SF1   11864
Cards
Entrez_Gene (NCBI)TM9SF1  10548  transmembrane 9 superfamily member 1
AliasesHMP70; MP70
GeneCards (Weizmann)TM9SF1
Ensembl hg19 (Hinxton)ENSG00000100926 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000100926 [Gene_View]  chr14:24190038-24195736 [Contig_View]  TM9SF1 [Vega]
ICGC DataPortalENSG00000100926
TCGA cBioPortalTM9SF1
AceView (NCBI)TM9SF1
Genatlas (Paris)TM9SF1
WikiGenes10548
SOURCE (Princeton)TM9SF1
Genetics Home Reference (NIH)TM9SF1
Genomic and cartography
GoldenPath hg38 (UCSC)TM9SF1  -     chr14:24190038-24195736 -  14q12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TM9SF1  -     14q12   [Description]    (hg19-Feb_2009)
EnsemblTM9SF1 - 14q12 [CytoView hg19]  TM9SF1 - 14q12 [CytoView hg38]
Mapping of homologs : NCBITM9SF1 [Mapview hg19]  TM9SF1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA663295 AK292110 AK304642 AW015727 AW452952
RefSeq transcript (Entrez)NM_001014842 NM_001289006 NM_006405
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TM9SF1
Cluster EST : UnigeneHs.91586 [ NCBI ]
CGAP (NCI)Hs.91586
Alternative Splicing GalleryENSG00000100926
Gene ExpressionTM9SF1 [ NCBI-GEO ]   TM9SF1 [ EBI - ARRAY_EXPRESS ]   TM9SF1 [ SEEK ]   TM9SF1 [ MEM ]
Gene Expression Viewer (FireBrowse)TM9SF1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10548
GTEX Portal (Tissue expression)TM9SF1
Protein : pattern, domain, 3D structure
UniProt/SwissProtO15321   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO15321  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO15321
Splice isoforms : SwissVarO15321
PhosPhoSitePlusO15321
Domains : Interpro (EBI)EMP70   
Domain families : Pfam (Sanger)EMP70 (PF02990)   
Domain families : Pfam (NCBI)pfam02990   
Conserved Domain (NCBI)TM9SF1
DMDM Disease mutations10548
Blocks (Seattle)TM9SF1
SuperfamilyO15321
Human Protein AtlasENSG00000100926
Peptide AtlasO15321
HPRD09987
IPIIPI01008740   IPI00555729   IPI00983078   IPI00977445   IPI00981444   IPI00867593   IPI00979200   IPI00984568   IPI00975542   IPI00983248   IPI00976729   IPI00978596   
Protein Interaction databases
DIP (DOE-UCLA)O15321
IntAct (EBI)O15321
FunCoupENSG00000100926
BioGRIDTM9SF1
STRING (EMBL)TM9SF1
ZODIACTM9SF1
Ontologies - Pathways
QuickGOO15321
Ontology : AmiGOautophagosome membrane  lysosome  lysosomal membrane  autophagy  integral component of membrane  cytoplasmic vesicle  
Ontology : EGO-EBIautophagosome membrane  lysosome  lysosomal membrane  autophagy  integral component of membrane  cytoplasmic vesicle  
NDEx NetworkTM9SF1
Atlas of Cancer Signalling NetworkTM9SF1
Wikipedia pathwaysTM9SF1
Orthology - Evolution
OrthoDB10548
GeneTree (enSembl)ENSG00000100926
Phylogenetic Trees/Animal Genes : TreeFamTM9SF1
HOVERGENO15321
HOGENOMO15321
Homologs : HomoloGeneTM9SF1
Homology/Alignments : Family Browser (UCSC)TM9SF1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTM9SF1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TM9SF1
dbVarTM9SF1
ClinVarTM9SF1
1000_GenomesTM9SF1 
Exome Variant ServerTM9SF1
ExAC (Exome Aggregation Consortium)TM9SF1 (select the gene name)
Genetic variants : HAPMAP10548
Genomic Variants (DGV)TM9SF1 [DGVbeta]
DECIPHERTM9SF1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTM9SF1 
Mutations
ICGC Data PortalTM9SF1 
TCGA Data PortalTM9SF1 
Broad Tumor PortalTM9SF1
OASIS PortalTM9SF1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTM9SF1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTM9SF1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TM9SF1
DgiDB (Drug Gene Interaction Database)TM9SF1
DoCM (Curated mutations)TM9SF1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TM9SF1 (select a term)
intoGenTM9SF1
Cancer3DTM9SF1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTM9SF1
Genetic Testing Registry TM9SF1
NextProtO15321 [Medical]
TSGene10548
GENETestsTM9SF1
Target ValidationTM9SF1
Huge Navigator TM9SF1 [HugePedia]
snp3D : Map Gene to Disease10548
BioCentury BCIQTM9SF1
ClinGenTM9SF1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10548
Chemical/Pharm GKB GenePA36565
Clinical trialTM9SF1
Miscellaneous
canSAR (ICR)TM9SF1 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTM9SF1
EVEXTM9SF1
GoPubMedTM9SF1
iHOPTM9SF1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Wed May 31 15:45:40 CEST 2017

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